Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq9 219 5e-52 seq21 82.4 1e-10 >seq9 Length=1465676 Score = 219 bits (242), Expect = 5e-52 Identities = 1106/1741 (64%), Gaps = 35/1741 (2%) Strand=Plus/Minus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 ||||| |||||||| ||||||||||| || | ||||| | | ||||| || | | Sbjct 1038134 CGGAGGTAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATGGATGTG 1038075 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGA 110480 | |||| ||| || || | |||| || ||||| ||| |||| | || |||| Sbjct 1038074 ATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTCAGGGACTGAGACT--GATCGATGA 1038017 Query 110481 AGCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGC 110540 || || || | || ||||| | |||| | | || ||||| || || Sbjct 1038016 AGGCACCACGGTCAGCGGCCATCTGGATGATGGTACGCTGCGAGATCTCCCAGACGGTCT 1037957 Query 110541 GATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCT 110600 || ||| ||||||| || || ||||| | | ||| ||| |||||||| ||| | Sbjct 1037956 TGTACAGAGTCTTGATCTCGTCAGGGATGTTGGGGATGCGCTGAATGGAACCACCCTCAG 1037897 Query 110601 TCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGA--- 110657 | ||| | | |||||| | || || ||||||||| || | ||||| |||| Sbjct 1037896 CGATGATGCGGTTCTTCATGTTCTCGGTCCAGAGACCCATGTCGACCAGGTCCTTGAGCA 1037837 Query 110658 -CGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTT 110716 | ||| | ||||||| |||||||| || || | | ||||||||| Sbjct 1037836 ACCAGGGG----TTGACAACCTGGAACTCACCAGCAAGCACGCGGCGAGAGTAGATGTTC 1037781 Query 110717 GTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGC 110776 | |||||| || || ||||| || || || || | || || | ||||||||| || ||| Sbjct 1037780 GATGTGTAGGGCTCGAAGCACTCGTTGTTGCCGAGAATCTGGGAGGTGGAGGCAGTAGGC 1037721 Query 110777 ATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACA 110836 || || || | | || ||| || | ||| | || || |||| || | Sbjct 1037720 ATGGGCGCGACGAGTAGCGAGTTGCGGACACCGTGCTGAGCAATCTTCGCCTTCAGCGCC 1037661 Query 110837 TCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTT 110894 |||||||| | || | | || || || |||||| |||| |||||||| | || | Sbjct 1037660 TCCCAGTCCCAAA-GATCGGTGGGCTTGACGC-CCCACAGGTCATACTGAAGCTCACCCT 1037603 Query 110895 GGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGC 110954 ||| ||| || |||||| | || || |||| || | | | ||| | || ||| Sbjct 1037602 TGGAGATGGGCGAGCCCTCATATGTCTCGTAGGGGCCAAGCTCCTTAGCAATGTCGCAGG 1037543 Query 110955 TCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT 111014 | || | ||||| || |||||||| ||||| || | ||||||||||| Sbjct 1037542 AGGAGGTCAAAGCGGCGTGGTAGATGGTTTCGAAGATCTTGATGTTGAGCTCCTTGGCTT 1037483 Query 111015 CATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCA 111074 || || || || | |||| || || |||| || ||||| || ||||| | Sbjct 1037482 CAGGAGACTCGAAAGGCAGGCGGAGAGCAAGGAAAGCATCAGCAAGACCCTGGACACCGA 1037423 Query 111075 AACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTC 111134 |||||| |||||||| || | || || || ||| ||||| || || Sbjct 1037422 GACCAATGGGTCTGTGACGGAAGTTGCTGCGGCGTGCCTCCTCGACGGGGTAGTGGTTGA 1037363 Query 111135 TGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCAT 111194 || |||| ||| || || || | || || || ||||| || | Sbjct 1037362 CCTCGATGATCTTGTTGAGGTTACGTGTGCAGACCTGAACGACATCGTGAAGCTTCTGGA 1037303 Query 111195 AATCAAAAGTGCGAGTCTCTTCA--TTGACATACTTTGGAAGGGCGATTGATGCCAAATT 111252 | || || || | ||| | | || | || || || | || |||| || Sbjct 1037302 AGTCGAACTCGCCG--CGCTTGAAGTCAACGAAGGAGGGGAGAGCAACAGAGGCCAGGTT 1037245 Query 111253 GCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACT 111312 ||| ||||| |||||| | | |||||||| | ||||| || || | |||||| || Sbjct 1037244 GCAGACAGCGACCTCATCGGGAGCAGTGTACTCGATGATTTCAGTGCACAGGTTGGAGCT 1037185 Query 111313 CTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCAT 111372 || || || | ||||| ||||| |||||| ||||| ||||||||||||||||| Sbjct 1037184 GCGGATGGTACCAAGGTTCTTCTGGTTGCTCTTCCTGTTGGCAGCATCCTTGTAGAGCAT 1037125 Query 111373 GTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTG 111431 | |||| | || ||||| ||||| | | |||||| || | ||| | | || | | | Sbjct 1037124 GAAGGGGTTACCGGTCTCGGTCTGAGCCTCGAGAATGGCGTACCAGAGCTTCTGAGCACG 1037065 Query 111432 GTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCC 111490 | ||| | | | ||| | ||| | ||||||||| ||| ||||| | ||||| Sbjct 1037064 G-ACAGTCTCAC-GACCCTTGCCCGCTTTCTCGTACTTCTCGTACAGGGCGACGAACTCG 1037007 Query 111491 TCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCA 111550 ||||| |||| | ||| || || || || || || | || | ||| | || Sbjct 1037006 TCACCGTAGACGTCAGCGAGGCCAGGGCACTCGTTGGGGCACATGAGTGTCCACTCGCCG 1036947 Query 111551 CCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA 111610 | || || |||| |||||| || || || |||||||| | | |||||||| | Sbjct 1036946 TTCTGCTGGACACGCTCCATGAAGAGATCGGGGATCCACAGAGCGTAGAAGAGATCGCGG 1036887 Query 111611 CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCG 111670 ||| |||| || | || ||||| | | || ||||| | | || || ||| Sbjct 1036886 GCGCGAACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAAGCCGAAGACGTCAGCG 1036827 Query 111671 TGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTAC 111726 ||||||||||| || |||| |||| | || | | | ||| | | || | || Sbjct 1036826 TGCCATGGCTCGAGGTAGATGGCGAAGGCACCGGGGCGCTTGTTGCC-ACCCTGGTCGAC 1036768 Query 111727 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 111786 ||||| || ||| ||| | || || ||||| || || | ||| | ||| || || Sbjct 1036767 GTAGCGGGCAGTGTTGTTGTAGACACGGAGCATGGGGATGAGACCGTTCGATGTTCCGTT 1036708 Query 111787 TGTCCC-CCGAA-TACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 111844 || || |||| || ||| | |||| | | |||| || | ||||| || Sbjct 1036707 GGTTCCTCCGATGTAGGAGCC--AGTGGCACGAATGCGGTGGACGTTGAGGCCAATTCCG 1036650 Query 111845 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 111904 ||||| ||| ||||| ||| || | | || || | ||||| || | ||| | Sbjct 1036649 CCAGCAGTCTTGGAGATCAACGCGCAGGTCTTGAGTGTGTCGTAGATGCCCTCGATGCTG 1036590 Query 111905 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 111964 |||||||| || |||| |||||||| ||||||||||| ||||| || || ||| Sbjct 1036589 TCCTCCTTCATGTCGATGAGGAAGCAGGACGACATCTGCGGCGAGGGTGTGCCGGCGTTG 1036530 Query 111965 AAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAA 112023 ||||| || || | ||||| |||| ||| | || ||||| | |||||||||||| | Sbjct 1036529 AAGAGCGTCGGCGAGGCGTGTGTGAAG-TACTTCTGCGACATGTAGTCGTATGTCTCGAT 1036471 Query 112024 GACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 | | || ||||| ||| ||||||||||| || || ||||||| ||||| ||| || Sbjct 1036470 GGCCTTCTCGATGTCCTCCATGTGGATGCCGACGGCAACACGCATGAGCATGTGCTGCGG 1036411 Query 112084 G 112084 | Sbjct 1036410 G 1036410 >seq21 Length=968111 Score = 82.4 bits (90), Expect = 1e-10 Identities = 211/313 (67%), Gaps = 10/313 (3%) Strand=Plus/Minus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGT-TGATTTTCGCGGGCGATTTCAAAGAG 11688 || ||||||||||| ||||||| ||||||||| || | || ||| ||| | | || || Sbjct 87447 GCGTCAATCTCATCGATGAAGATGATACATGGTGTGCTCTT-GCGCGCGTTGGCGAACAG 87389 Query 11689 ATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG--CGGCAGAG 11746 || || || | ||||| ||||| || |||||||| || || | | | || || Sbjct 87388 GTCTCGTACTCGCGATGCACCAACACCGACGAACATCTCAACGAATTCGGAACCGCTGA- 87330 Query 11747 CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806 |||| || ||| || || || || || || |||| ||| || | ||||| || Sbjct 87329 CACT-GAAGAAAGGCACGCCAGACTCGCCAGCTGTGGCCTTGGCAAGCAATGTCTTACCG 87271 Query 11807 GTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC--ACTTCCAAAAT 11864 |||||||| ||| | ||||| ||||| ||||| ||||| || || |||| | Sbjct 87270 GTACCTGGGGGACCAGAGAGAACAGCGCCGCGGGGAATCTTAGCGCCGAGCTTCTGGA-- 87213 Query 11865 ATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAA 11924 | | |||| | |||||| ||| ||||| ||| || || | || ||| |||| | Sbjct 87212 ACCGTCCGGGGTCCTTGAGGAAAGACACAAACTCCATAATCTCCTGCTTAGCCTCGTCCA 87153 Query 11925 TCCCCTCAACATC 11937 | || |||| || Sbjct 87152 TGCCAGCAACGTC 87140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030288612800