Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq9 275 8e-69 seq14 104 3e-17 >seq9 Length=1465676 Score = 275 bits (304), Expect = 8e-69 Identities = 1143/1776 (64%), Gaps = 57/1776 (3%) Strand=Plus/Minus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 |||||||||||||| | ||| | | |||||||||||||| || |||||||| | Sbjct 1038166 TGAACTGAATGGGTGCAGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTGAGAC 1038107 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 | |||||||| || | ||||| || | | |||| | || || | |||| Sbjct 1038106 CGAGCTTCCAGCCAGCGAAGTGCATGGATGTGATCTTGCCCATAGTAGGCTCCTTCATGT 1038047 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 || ||||| || || |||||||||||| || || || || ||||| | || | Sbjct 1038046 GGATGTTCAGGGACTGAGACTGATCGATGAAGGCACCACGGTCAGCGGCCATCTGGATGA 1037987 Query 117985 CATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATAT 118044 | | ||| ||||| || ||| |||| || |||| || || || ||||| | Sbjct 1037986 TGGTACGCTGCGAGATCTCCCAGACGGTCTTGTACAGAGTCTTGATCTCGTCAGGGATGT 1037927 Query 118045 CCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGACC 118104 ||| || ||||| |||||| | || ||| | | |||||| | || | || Sbjct 1037926 TGGGGATGCGCTGAATGGAACCACCCTCAGCGATGATGCGGTTCTTCATGTTCTCGGTCC 1037867 Query 118105 AGAGACCAATCTTTTTGAGATCCT----CCACGAGATGCTTATTGACAACAACAAACTCA 118160 ||||||| || | || |||| | || || | |||||||| |||||| Sbjct 1037866 AGAGACCCATGTCGACCAGGTCCTTGAGCAACCAGGGG----TTGACAACCTGGAACTCA 1037811 Query 118161 CCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTT 118219 || || || ||| | ||| ||||| || | ||||| ||||| |||||||| ||||| Sbjct 1037810 CCAGCAAGCACGCGGCG-AGAGTAGATGTTCGATGTGTAGGGCTCGAAGCACTCGTTGTT 1037752 Query 118220 ACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAG 118279 || | || |||| |||||||| || |||||||| || | ||| || ||| |||| Sbjct 1037751 GCCGAGAATCTGGGAGGTGGAGGCAGTAGGCATGGGCGCGACGAGTAGCGAGTTGCGGAC 1037692 Query 118280 ACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTA------GTTGAGCTTTGT 118333 ||| | | ||| |||| || || |||||||| | | || |||| | Sbjct 1037691 ACCGTGCTGAGCAATCTTCGCCTTCAGCGCCTCCCAGTCCCAAAGATCGGTGGGCTT-GA 1037633 Query 118334 CTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 118393 | |||| ||| ||| |||| || ||| | ||| ||||| |||||| |||| Sbjct 1037632 CGCCCC-----ACAGGTCATACTGAAGCTCACCCTTGGAGATGGGCGAGCCCTCATATGT 1037578 Query 118394 CTCATATGGGCCCTCAACCTCCGC--CAAT-TCGGAGCTCGCCTCGAGGGCTGCGTGATA 118450 ||| || ||||| || |||| |||| ||| || | | || ||||| || Sbjct 1037577 CTCGTAGGGGCC---AAGCTCCTTAGCAATGTCGCAGGAGGAGGTCAAAGCGGCGTGGTA 1037521 Query 118451 CATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCG 118510 || ||||| || || || | ||||||| || || || || | || || Sbjct 1037520 GATGGTTTCGAAGATCTTGATGTTGAGCTCCTTGGCTTCAGGAGACTCGAAAGGCAGGCG 1037461 Query 118511 GCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 118570 | || || |||| || ||||| ||||||||||| ||||| || | || | | Sbjct 1037460 GAGAGCAAGGAAAGCATCAGCAAGACCCTGGACACCGAGACCAATGGGTCTGTGACGGAA 1037401 Query 118571 ATTAGACTTC--CGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGA 118628 || || | || || ||| ||||| || || ||||| | | | || || Sbjct 1037400 GTTG--CTGCGGCGTGCCTCCTCGACGGGGTAGTGGTTGACCTCGATGATCTTGTTGAGG 1037343 Query 118629 TTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCT 118688 || ||| |||| || || |||||||| | | | || || || || | || Sbjct 1037342 TTACGTGTGCAGACCTGAACGACATCGTGAAGCTTCTGGAAGTCGAA-CT-CGCCGCGCT 1037285 Query 118689 TCATTGACATACTTAGGAAGGGCGATTGAC----GCCAGATTACACACAGAGGTCTCATC 118744 | | | || || |||| ||| || || ||||| || || |||| | |||||| Sbjct 1037284 TGAA-GTCA-ACGAAGGAGGGGAGAGCAACAGAGGCCAGGTTGCAGACAGCGACCTCATC 1037227 Query 118745 CTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTT 118804 | |||||||||| || ||||| ||||||| ||| || || ||||| || | ||| Sbjct 1037226 GGGAGCAGTGTACTCGATGATTTCAGTGCACAGGTTGGAGCTGCGGATGGTACCAAGGTT 1037167 Query 118805 CTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTC 118864 ||| || || ||| |||| ||||||||||| |||||| | || | || ||||| Sbjct 1037166 CTTCTGGTTGCTCTTCCTGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTACCGGTCTC 1037107 Query 118865 CGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTC 118923 || || | || |||||| || | ||||| | || | ||| | ||||| | | Sbjct 1037106 GGTCTGAGCCTCGAGAATGGCGTACCAGAGCTTCTG-AGCACGGACAGTCTCACGACCCT 1037048 Query 118924 GCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGA 118983 ||| ||| ||||||||| ||| ||||| | ||||| ||||| | | || | || Sbjct 1037047 TGCCCGCTTTCTCGTACTTCTCGTACAGGGCGACGAACTCGTCACCGTAGACGTCAGCGA 1036988 Query 118984 GCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCA 119043 | || || || | ||||| | ||| | ||| | || || || || |||| || Sbjct 1036987 GGCCAGGGCACTCGTTGGGGCACATGAGTGTCCACTCGCCGTTCTGCTGGACACGCTCCA 1036928 Query 119044 TGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCC 119103 ||||||| || |||||||| || || |||||||||| || |||| | || || | | Sbjct 1036927 TGAAGAGATCGGGGATCCACAGAGCGTAGAAGAGATCGCGGGCGCGAACCTCCTCCTTGC 1036868 Query 119104 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 119163 | || || | | || | ||| | | || || |||||||| || || ||||| | Sbjct 1036867 CGTGGTTCTTCCTGAGGTCGAGGAAGCCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGA 1036808 Query 119164 CCGCGATTG-AC-----CCCTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGT 119217 |||| | || | ||| | | ||| |||||| || || | |||||| || Sbjct 1036807 TGGCGAAGGCACCGGGGCGCTT--GTTG-CCACCCTGGTCGACGTAGCGGGCAGTGTTGT 1036751 Query 119218 TAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTG-TCCCCCGA-ATACG 119275 | | ||||| ||||| || |||| ||| | ||| || || | ||| |||| || | Sbjct 1036750 TGTAGACACGGAGCATGGGGATGAGACCGTTCGATGTTCCGTTGGTTCCTCCGATGTAGG 1036691 Query 119276 AGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGAT 119335 || | | |||| | | ||||| || | ||||| || || || ||| ||||| Sbjct 1036690 AGCC--AGTGGCACGAATGCGGTGGACGTTGAGGCCAATTCCGCCAGCAGTCTTGGAGAT 1036633 Query 119336 TTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGAT 119395 |||||| | |||| || ||||||| || ||||| ||| |||| | |||| Sbjct 1036632 CAACGCGCAGGTCTTGAGTGTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCGAT 1036573 Query 119396 GAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGC 119455 |||||||||| |||||| || ||| |||||| || ||||||||||| || || | || Sbjct 1036572 GAGGAAGCAGGACGACATCTGCGGCGAGGGTGTGCCGGCGTTGAAGAGCGTCGGCGAGGC 1036513 Query 119456 GTGGATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTT 119514 ||| |||| ||| | || ||||| | |||||| ||||| | | | ||||| | Sbjct 1036512 GTGTGTGAA-GTACTTCTGCGACATGTAGTCGTATGTCTCGATGGCCTTCTCGATGTCCT 1036454 Query 119515 CCCCGTGAATACCGATCGAGACCCGCATAAACATGT 119550 || ||| || |||| | || ||||| | ||||| Sbjct 1036453 CCATGTGGATGCCGACGGCAACACGCATGAGCATGT 1036418 >seq14 Length=1191321 Score = 104 bits (114), Expect = 3e-17 Identities = 291/442 (66%), Gaps = 10/442 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || |||||||||||||| || ||||| ||| | | || |||||||| Sbjct 901147 TAGTCACCGACACGCTTCTCGAAGAAATTGGTCTTGCCGGCGAGCGAAATGTTCTCCATG 901088 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCA--AATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 ||||| || ||||| | | ||| | | ||| || |||| ||| |||| Sbjct 901087 AAATCGAAGGGGTTGGTAGCGTTGTAGTACTTG--GGGTTGCCAAGGGCCAAGAGCAGAC 901030 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | || | ||| |||| ||||||| | |||| || |||||| |||| || || Sbjct 901029 GGTCAGCAACGAACTCGATGTACTGACACATGAGTGTGGCGTTCATGCCGAGCAGAGCAC 900970 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 | || || ||||| | | |||| ||| ||| || ||||| || | ||| || | Sbjct 900969 AGGGAAGAGCGTCTGACAGGAACTCCTGCTCGATTGTGACAGCCTCGGTGATGATAGCCT 900910 Query 129966 GAATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACT 130022 | | |||| ||| || | | ||| | | || || | || |||||| | Sbjct 900909 CGACAGCCTCCTTGCTGGGACGGTTGTTGAGGAGAGAAAACAACAAG--CA-GGCAAAAT 900853 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||| | ||||| ||||| |||||||| || || ||||| ||||| ||||||| Sbjct 900852 CTGTGTGCATGCCCTCATCACGAGAGATGAGCTCGTTGGAGAATGTGAGACCGGGCATGA 900793 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 |||| ||||| |||| |||||| || | || || ||| ||||||||| ||||| | Sbjct 900792 GACCACGCTTTTTCAGCCAGAAGATGGACGCGAAGGAACCACTGAAGAAGATACCCTCAA 900733 Query 130143 CACACGCGAACGCAAAGAGACG 130164 | ||||| || | ||| || Sbjct 900732 CGGCAGCGAAGGCGACGAGGCG 900711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618433514764080