Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq9 266 4e-66 seq14 123 3e-23 seq21 87.8 2e-12 >seq9 Length=1465676 Score = 266 bits (294), Expect = 4e-66 Identities = 1122/1743 (64%), Gaps = 39/1743 (2%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| ||||| ||||||| || ||| |||| || || ||| ||||| || | Sbjct 1036410 CCCGCAGCACATGCTCATGCGTGTTGCCGTCGGCATCCACATGGAGGACATCGAGAAGGC 1036469 Query 104281 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | | |||||||||||| | ||||| || | ||| |||| ||||| | || || |||| Sbjct 1036470 CATCGAGACATACGACTACATGTCGCAGAAGTAC-TTCACACACGCCTCGCCGACGCTCT 1036528 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || || ||||| || || ||||| |||||||| |||| || ||||||| Sbjct 1036529 TCAACGCCGGCACACCCTCGCCGCAGATGTCGTCCTGCTTCCTCATCGACATGAAGGAGG 1036588 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || ||| | || ||||| | || || | | || ||| ||||| ||| |||| Sbjct 1036589 ACAGCATCGAGGGCATCTACGACACACTCAAGACCTGCGCGTTGATCTCCAAGACTGCTG 1036648 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGGA-C 104517 | || ||||| | || |||| | | |||| | ||| || |||| ||| | Sbjct 1036649 GCGGAATTGGCCTCAACGTCCACCGCATTCGTGCCACTGG--CTCCTACATCGGAGGAAC 1036706 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 || || ||| | ||| | || || ||||| || || | ||| ||| || ||||| Sbjct 1036707 CAACGGAACATCGAACGGTCTCATCCCCATGCTCCGTGTCTACAACAACACTGCCCGCTA 1036766 Query 104578 TGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 || | || | ||| | | | | || | |||| |||| || |||||||||| Sbjct 1036767 CGTCGACCAGGGTGG-CAACAAGCGCCCCGGTGCCTTCGCCATCTACCTCGAGCCATGGC 1036825 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| || || | | ||||| || | | ||||| || | ||||||| || Sbjct 1036826 ACGCTGACGTCTTCGGCTTCCTCGACCTCAGGAAGAACCACGGCAAGGAGGAGGTTCGCG 1036885 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 |||||||||||||| |||||| ||||| || |||||||||||| || | || || ||| Sbjct 1036886 CCCGCGATCTCTTCTACGCTCTGTGGATCCCCGATCTCTTCATGGAGCGTGTCCAGCAGA 1036945 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813 ||| | ||| | ||| | || || || || ||||| ||| | || | | |||| Sbjct 1036946 ACGGCGAGTGGACACTCATGTGCCCCAACGAGTGCCCTGGCCTCGCTGACGTCTACGGTG 1037005 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGC 104873 | ||||| | ||||| ||| ||||||||| ||| || || || ||| || | Sbjct 1037006 ACGAGTTCGTCGCCCTGTACGAGAAGTACGAGAAAGCGGGCAAGGGTCGTGAGACTGTCC 1037065 Query 104874 CAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAC 104932 ||| | || | | ||| | || |||||| || |||| |||||||| |||| || | | Sbjct 1037066 GTGCT-CAGAAGCTCTGGTACGCCATTCTCGAGGCTCAGACCGAGACCGGTAACCCCTTC 1037124 Query 104933 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 104992 ||||| ||||| || || ||| ||||| || || ||||| | ||| ||| Sbjct 1037125 ATGCTCTACAAGGATGCTGCCAACAGGAAGAGCAACCAGAAGAACCTTGGTACCATCCGC 1037184 Query 104993 AGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 105052 || ||||| || || || |||||| | || | || | |||||| ||||| || Sbjct 1037185 AGCTCCAACCTGTGCACTGAAATCATCGAGTACACTGCTCCCGATGAGGTCGCTGTCTGC 1037244 Query 105053 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA--TCCAGAGACAAAGACATTTGATT 105110 ||||| || || | ||||||||| | || || || || | | || || || | Sbjct 1037245 AACCTGGCCTCTGTTGCTCTCCCCTCCTTCGTTGACTTCAAGCG-CGGCGA-GTTCGACT 1037302 Query 105111 ATGAAAAACTCCACGAAGT--TACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 | || || ||||| || | | | ||| ||| ||||| |||| | || || Sbjct 1037303 TCCAGAAGCTTCACGATGTCGTTC-AGGTCTG-CACACGTAACCTCAACAAGATCATCGA 1037360 Query 105169 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228 || |||||||| ||| || || || | | ||| | || ||||| Sbjct 1037361 GGTCAACCACTACCCCGTCGAGGAGGCACGCCGCAGCAACTTCCGTCACAGACCCATTGG 1037420 Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGA 105288 ||||||||| |||||||| || |||| ||| || | |||| | || || || Sbjct 1037421 TCTCGGTGTCCAGGGTCTTGCTGATGCTTTCCTTGCTCTCCGCCTGCCTTTCGAGTCTCC 1037480 Query 105289 CGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA-GG 105347 ||||| ||||| |||| || || || ||||| || ||||||||| |||| Sbjct 1037481 TGAAGCCAAGGAGCTCAACATCAAGATCTTCGAAACCATCTACCACGCCGCT-TTGACCT 1037539 Query 105348 CGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC-TCCAGCT 105406 | | || | || ||| ||| || || || || | |||||| || ||| || Sbjct 1037540 CCTCCTGCGACATTGCTAAGGAGCTTGGCCCCTACGAGACATATGAGGGCTCGCCCATCT 1037599 Query 105407 TCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGG 105466 || | || | |||||| | ||| |||||| | || ||| || | |||||| Sbjct 1037600 CCA-AGGGTGAGCTTCAGTATGACCTGTGGGGCGTCAAGCCCACCGATCTTTGGGACTGG 1037658 Query 105467 GAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCA 105526 || || || |||| || || | ||| | || ||| || ||| | || || Sbjct 1037659 GAGGCGCTGAAGGCGAAGATTGCTCAGCACGGTGTCCGCAACTCGCTACTCGTCGCGCCC 1037718 Query 105527 ATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACG 105586 ||||| || ||||||||| | || || | || || || || ||||| || |||||||| Sbjct 1037719 ATGCCTACTGCCTCCACCTCCCAGATTCTCGGCAACAACGAGTGCTTCGAGCCCTACACA 1037778 Query 105587 ACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCT 105645 |||||||||| ||| | | || || || ||||| | ||||||| | || Sbjct 1037779 TCGAACATCTACTCT-CGCCGCGTGCTTGCTGGTGAGTTCCAGGTTGTCAA----CCCCT 1037833 Query 105646 CGTGG----ATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGG 105701 || | | ||||| || || ||||||||| || || | |||||| | | ||| Sbjct 1037834 GGTTGCTCAAGGACCTGGTCGACATGGGTCTCTGGACCGAGAACATGAAGAACCGCATCA 1037893 Query 105702 TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGT 105761 | | ||||||||||||||| || | || || | || || |||| ||| Sbjct 1037894 TCGCTGAGGGTGGTTCCATTCAGCGCATCCCCAACATCCCTGACGAGATCAAGACTCTGT 1037953 Query 105762 ACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 105821 || || || ||||| ||| | | |||| | |||||||| || |||||| Sbjct 1037954 ACAAGACCGTCTGGGAGATCTCGCAGCGTACCATCATCCAGATGGCCGCTGACCGTGGTG 1038013 Query 105822 GCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGATGTCCAA 105879 |||||| |||| |||| ||| |||| || |||| | || || ||| ||| Sbjct 1038014 CCTTCATCGATC--AGTCTCAGTCCCTGAACATCCACATGAAGGAGCCTACTATGGGCAA 1038071 Query 105880 GCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCT 105939 | || | || |||||| | | |||||| |||||||| || || ||||| ||||| Sbjct 1038072 GATCACATCCATGCACTTCGCTGGCTGGAAGCTCGGTCTCAAGACCGGCATGTACTACCT 1038131 Query 105940 CCG 105942 ||| Sbjct 1038132 CCG 1038134 >seq14 Length=1191321 Score = 123 bits (136), Expect = 3e-23 Identities = 119/150 (79%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 94807 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTAT 94865 || ||| |||| || || |||||||||||||||||| |||||||||| ||| | || Sbjct 900711 CGCCTCGTCGCCTTCGCTGCCGTTGAGGGTATCTTCTTCAGTGGTTCCTTC-GCGTCCAT 900769 Query 94866 TTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTC 94925 | ||||| || ||||| ||||||||||| |||||| |||||||||||||| ||||| Sbjct 900770 CTTCTGGCTGAAAAAGCGTGGTCTCATGCCCGGTCTCACATTCTCCAACGAGCTCATCTC 900829 Query 94926 TCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||| ||||| | ||| ||| ||||| Sbjct 900830 TCGTGATGAGGGCATGCACACAGATTTTGC 900859 >seq21 Length=968111 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGT-TGATTTTCGCGAGCGACTTCAAAGA 9761 ||| ||||||||||| ||||||| ||| |||||| || | || ||| ||| | || | Sbjct 87448 GGCGTCAATCTCATCGATGAAGATGATACATGGTGTGCTCTT-GCGCGCGTTGGCGAACA 87390 Query 9762 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--CGGCGGA 9819 | || ||||| ||| || || ||||| || |||||||| || || | | | || | Sbjct 87389 GGTCTCGTACTCGCGATGCACCAACACCGACGAACATCTCAACGAATTCGGAACCGCTG- 87331 Query 9820 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 ||| | || ||| || || ||| || || || |||| ||| || | |||||||| Sbjct 87330 ACACT-GAAGAAAGGCACGCCAGACTCGCCAGCTGTGGCCTTGGCAAGCAATGTCTTACC 87272 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 |||||||| ||| | ||| | || || || |||||||| ||||| Sbjct 87271 GGTACCTGGGGGACCAGAGAGAACAGCGCCGCGGGGAATCTTAGCGCC 87224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259210614320