Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq4 143 8e-29 seq25 113 1e-19 seq18 100 9e-16 >seq4 Length=1699079 Score = 143 bits (158), Expect = 8e-29 Identities = 175/236 (74%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | || || || || || || |||||||| | Sbjct 982780 TTTGCATACCACCACGGAGACGGAGCACCAAGTGGAGTGTGGATTCCTTCTGAATATTGT 982721 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | ||| || ||||| || || || || ||||| ||||| || |||||||||| Sbjct 982720 AGTCCGAGAGTGTGCGACCATCCTCTAGCTGCTTACCAGCGAAGATAAGGCGTTGCTGAT 982661 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 |||| || || ||||| || |||||||| || ||| || ||||| || || | || ||| Sbjct 982660 CAGGGGGGATGCCTTCCTTGTCCTGAATCTT-GCTCTTGACATTGTCGATAGTGTCGGAT 982602 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || ||||| || | ||||| ||||| || || || || || |||||||| Sbjct 982601 GACTCCACCTCAAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 982546 Score = 131 bits (144), Expect = 5e-25 Identities = 389/596 (65%), Gaps = 7/596 (1%) Strand=Plus/Plus Query 349306 CGTTGCATTTACCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGC 349365 |||||| || ||||| || ||||| | ||||||||||| || || || || | ||| Sbjct 252300 CGTTGCCTTCACCGACACAGAGCGCCTTATTGGTGATTCCGCGAAGAACCAGGTTGCCAT 252359 Query 349366 TAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--C 349423 || ||| || || || || || |||||||| ||||| || | | || | || | Sbjct 252360 GAACCCAGTCAACACAGTCTTCGACGCTAAGCGTCTTATCGGACGCAAGTTCGCCGATGC 252419 Query 349424 AAATCTACACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGAT 349483 | | || | ||| | || || || || || | || | | | ||| | || Sbjct 252420 TGAGGTTCAGG--CCGATATGAAGCACTTCCCCTTCAAGGTCAT-CGAGAAGGC--TGGC 252474 Query 349484 AAACCAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATT 349543 || || | || ||||||| | || ||||| | || || ||| || || || Sbjct 252475 AAGCCTGTCATCCAGGTTGAGTTCAAGGGTGAGGAGAAGACCTTCACACCTGAGGAGATC 252534 Query 349544 TCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTA 349603 || || ||||| | || || |||| ||| | |||||| | || | |||| || || Sbjct 252535 TCTTCTATGGTCCTCGTCAAGATGAGGGAGACCGCTGAATCCTACCTCGGTGGCACCGTC 252594 Query 349604 ACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAA 349663 | | ||||| | || || || ||||| || || || | || ||| || || || Sbjct 252595 AACAACGCTGTCGTCACAGTCCCTGCCTACTTCAACGACTCGCAACGTCAGGCCACCAAG 252654 Query 349664 GATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCA 349723 |||||||| |||||| || | || || || | || || || || ||||| || || Sbjct 252655 GATGCTGGTCTCATTGCCGGCCTCAACGTCCTCCGTATCATCAACGAGCCCACCGCCGCT 252714 Query 349724 GCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGAT 349783 || || || || || ||||| || | || || || || |||| || || ||| Sbjct 252715 GCCATCGCCTACGGTCTTGACAAGAAGACCGAGGGTGAGCGCAACGTTCTCATCTTCGAT 252774 Query 349784 TTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTT 349843 | ||||||||||| || ||||| || || || || |||| ||||| || || || || Sbjct 252775 CTTGGTGGTGGTACATTCGATGTCTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTC 252834 Query 349844 AAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899 || | ||||| || ||||| || | ||||| ||||| || || || ||||| || Sbjct 252835 AAGTCGACTGCCGGAGATACTCACTTGGGTGGTGAAGACTTCGACAACCGTCTTGT 252890 Score = 125 bits (138), Expect = 2e-23 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || | || || || ||||| || || || ||||| || || Sbjct 983000 CCACCACGAAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCGGAA 982941 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || || ||||| | || || || |||||||| || |||||||| |||||||| Sbjct 982940 AGCGTGCGACCGTCTTCCAACTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCAGGAGGG 982881 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAAC 140689 || || || ||||||||||| |||| ||||| || || |||| || | ||| || || Sbjct 982880 ATGCCCTCCTTATCCTGAATCTTAGACTTTACGTTGTCGATCGTGTC-GCTGGACTCGAC 982822 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || | ||| | ||||| ||||| || || || |||||||| ||||| Sbjct 982821 CTCCAATGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAAATTTGCAT 982774 Score = 120 bits (132), Expect = 9e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || |||||||| ||||| || ||||| || ||||| Sbjct 982264 CATACCACCACGAAGGCGGAGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATC 982205 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || || || || ||||| || || || || || || ||||| | || ||||| || || Sbjct 982204 GGACAAAGTACGACCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGG 982145 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 || || ||||| || |||||||| || ||| || ||||| || || | || |||| | Sbjct 982144 GGGGATGCCTTCCTTGTCCTGAATCTT-GCTCTTGACATTGTCGATAGTGTCGGATGACT 982086 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGT 140713 | || ||||| || | ||||| ||||| Sbjct 982085 CCACCTCAAGGGTGATCGTCTTACCGGT 982058 >seq25 Length=545876 Score = 113 bits (124), Expect = 1e-19 Identities = 250/371 (67%), Gaps = 8/371 (2%) Strand=Plus/Minus Query 349531 ACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGA-AGCATATT 349589 ||||||||| || || | |||||| | | || |||||||| ||||||| ||| || Sbjct 137295 ACCCGAAGAGATCTCGGCTATGGTTCTTGGCAAGATGAAGGAGGTTGCTGAGAGC-TACC 137237 Query 349590 TAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGC 349649 | || || | || | | || || |||| || || ||||| || || || || |||| Sbjct 137236 TCGGCGAGCCCGTCAAGAACGCCGTCGTTACCGTCCCGGCCTACTTCAACGACGCTCAGC 137177 Query 349650 GTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATG 349709 | |||| || || || || || | ||| || || | || ||||| | | | || | Sbjct 137176 GCGCTGCCACGAAGGACGCCGGAACCATCGCCGGTCTCAACGTTCTCCGTGTCGTCAACG 137117 Query 349710 AACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaa--- 349766 ||||||| || || || | || || || ||||| || || |||||| | || Sbjct 137116 AACCCACCGCCGCCGCTCTCGCCTACGGCCTTGACAA---GACCGACCAAAAGGAACGCC 137060 Query 349767 aTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAG 349826 | |||| | | ||| | |||||||||||||| || || || | || || | |||| Sbjct 137059 AGGTTCTCGTCTACGATCTTGGTGGTGGTACTTTCGACGTTTCCATCCTCACTATCGAAG 137000 Query 349827 AGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTG 349886 |||| |||| || || | | || || ||||| || || || ||||| |||||||| | Sbjct 136999 AGGGCGTTTTCGAGGTCCAGTCTACCGCCGGTGACACTCACCTCGGTGGTGAAGATTTCG 136940 Query 349887 ATAATCGTCTC 349897 | || ||| || Sbjct 136939 ACAACCGTGTC 136929 >seq18 Length=1111935 Score = 100 bits (110), Expect = 9e-16 Identities = 106/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 ||||||||||| |||| || ||| || || | |||||||| || |||||||| || Sbjct 316474 CGTGGCACACCCAGTGTGACGTTC---TTGGAAGACACACCAGCGAAATGGAAAGTGTTG 316530 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| |||||||||||| ||||| || || | || |||||||||||| Sbjct 316531 AGCGTCATCTGCGTAGCGGGCTCACCAATGGACTGGGCGGCCAAGACACCAACCATTTCT 316590 Query 377578 CCAGGATTGACAATAGCCT 377596 ||||| |||| ||||| Sbjct 316591 CCAGGCGCGACAGCAGCCT 316609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515250167705054