Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq9 253 2e-62 seq14 84.2 2e-11 >seq9 Length=1465676 Score = 253 bits (280), Expect = 2e-62 Identities = 486/708 (69%), Gaps = 24/708 (3%) Strand=Plus/Plus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||| ||||||| ||| || |||||||| || |||||| |||| || || |||||| Sbjct 1036474 GAGACATACGACTACATGTCGCAGAAGTACTTCACACACGCCTCGCCGACGCTCTTCAAC 1036533 Query 53303 GCTGGTACGAATCAC-CCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 || || || | | | || ||||||||| ||||||||| | | |||||||| ||| Sbjct 1036534 GCCGGCAC-ACCCTCGCCGCAGATGTCGTCCTGCTTCCTCATCGACATGAAGGAGGACAG 1036592 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 ||||| ||||||||||| || |||||| || || ||||||||| | || || Sbjct 1036593 CATCGAGGGCATCTACGACACACTCAAGACCTGCGCGTTGATCTCCAAGACTGCTGGCGG 1036652 Query 53422 TATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAAC 53479 || || || || || | || | ||||| | ||| | ||| || || ||| Sbjct 1036653 AATTGGCCTCAACG--TCCACCGCATTCGTGCCACTGGCTCCTACATCGGAGGAACCAAC 1036710 Query 53480 GG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537 || | ||| | || || | || |||||||| |||| ||||||||| ||||| |||| Sbjct 1036711 GGAACATCGA--ACGGTCTCATCCCCATGCTCCGTGTCTACAACAACACTGCCCGCTACG 1036768 Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597 || |||||||||| |||||| || | |||||||||||||||||||| ||||||| Sbjct 1036769 TCGACCAGGGTGGCAACAAGCGCCCCGGTGCCTTCGCCATCTACCTCGAGCCATGGCACG 1036828 Query 53598 CCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCC 53657 | ||| | | | || ||||| || | ||| || || | || ||| | ||| || Sbjct 1036829 CTGACGTCTTCGGCTTCCTCGACCTCAGGAAGAACCACGGCAAGGAGGAGGTTCGCGCCC 1036888 Query 53658 GTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGAC 53716 | || || || ||| ||||||||||| || || ||||||||| | || || || || Sbjct 1036889 GCGATCTCTTCTAC-GCTCTGTGGATCCCCGATCTCTTCATGGAGCGTGTCCAGCAGAAC 1036947 Query 53717 GAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAG 53776 | |||||| || |||||||| ||||||||||| |||||| | ||||||||||| Sbjct 1036948 GGCGAGTGGACACTCATGTGCCCCAACGAGTGCCCTGGCCTCGCTGACGTCTACGGTGAC 1037007 Query 53777 GAGTTTAACGAGATGTATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGAAG 53830 ||||| || |||| || |||| || | |||| || ||| Sbjct 1037008 GAGTTCGTCGCCCTGTACGAGAAGTACGAGAAAGCGGGCAAGGGTCG------TGAGACT 1037061 Query 53831 GTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCG 53890 ||| || | || | ||| | || || ||| || ||| ||||| || | || Sbjct 1037062 GTCCGTGCTCAGAAGCTCTGGTACGCCATTCTCGAGGCTCAGACCGAGACCGGTAACCCC 1037121 Query 53891 TACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 | |||| |||||||||| | | |||| ||||||||||||||||||| Sbjct 1037122 TTCATGCTCTACAAGGATGCTGCCAACAGGAAGAGCAACCAGAAGAAC 1037169 Score = 104 bits (114), Expect = 3e-17 Identities = 299/451 (66%), Gaps = 17/451 (4%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| || ||||| ||||| ||||| || || || || | ||||| | |||||| Sbjct 1037695 CGCAACTCGCTACTCGTCGCGCCCATGCCTACTGCCTCCACCTCCCAGATTCTCGGCAAC 1037754 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| | ||||||||| ||||| || || |||||| Sbjct 1037755 AACGAGTGCTTCGAGCCCTACACATCGAACATCTACTCTCGCCGCGTGCTTGCTGGTGAG 1037814 Query 55604 TTTGTCATGATCAACAAGCACCTCG----TCAAGGACCTGCAGAAGATCAACAAGTGGAA 55659 || | |||| | ||| | ||||||||||| | || |||| Sbjct 1037815 TTCCAGGTTGTCAA----CCCCTGGTTGCTCAAGGACCTGGTCGACATGGGTCTCTGGAC 1037870 Query 55660 CCCGCAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCA--GAATCTGGAGA 55715 | | | || |||| || || | || | | || || ||| | || | ||| | Sbjct 1037871 CGAGAACATGAAGAACCGCATCAT-CGCTG-AGGGTGGTTCCATTCAGCGCATCCCCAAC 1037928 Query 55716 TTCCTCTG-CG-TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCT 55773 ||| ||| || ||||| | ||| ||| || |||||||| | ||| | | Sbjct 1037929 ATCC-CTGACGAGATCAAGACTCTGTACAAGACCGTCTGGGAGATCTCGCAGCGTACCAT 1037987 Query 55774 GATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTT 55833 || | ||| ||||| |||||||| | |||||| ||||| ||||| ||||||||| Sbjct 1037988 CATCCAGATGGCCGCTGACCGTGGTGCCTTCATCGATCAGTCTCAGTCCCTGAACATCCA 1038047 Query 55834 CATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGG 55893 |||| || | ||| | ||| |||| | | || |||||||| || |||||| || Sbjct 1038048 CATGAAGGAGCCTACTATGGGCAAGATCACATCCATGCACTTCGCTGGCTGGAAGCTCGG 1038107 Query 55894 ACTCAAGACGGGTATGTACTATCTGCGGACC 55924 |||||||| || |||||||| || || ||| Sbjct 1038108 TCTCAAGACCGGCATGTACTACCTCCGTACC 1038138 >seq14 Length=1191321 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || || ||||| || |||||||| |||| ||| ||||||| |||||||||||||||| Sbjct 900805 AGACCGGGCATGAGACCACGCTTTTTCAGCCAGAAGATGGACGCGAAGGAACCACTGAAG 900746 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 ||||| || || || || |||||||| ||||| | ||||| Sbjct 900745 AAGATACCCTCAACGGCAGCGAAGGCGACGAGGCGGTTGGCGAA 900702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214508836400