Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq9 212 7e-50 seq4 172 6e-38 seq13 113 5e-20 seq20 111 2e-19 >seq9 Length=1465676 Score = 212 bits (234), Expect = 7e-50 Identities = 627/960 (65%), Gaps = 15/960 (2%) Strand=Plus/Minus Query 80809 TCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAG 80868 ||||||| ||| ||||| ||||| ||| | ||||| ||||| ||||| ||| Sbjct 1037360 TCGATGATCTTGTTGAGGTTACGTGTGCAGACCTGAACGACATCGTGAAGCTTCTGGAAG 1037301 Query 80869 TCGAATTGGTTCCCCTTCACA--AATGCCGGAAGGCTCAGGGAC----GCCAGATTGCAC 80922 ||||| | | | ||| | || | ||| || || || ||||| ||||| Sbjct 1037300 TCGAACTCGCCGCGCTTGAAGTCAACGAAGGAGGGGAGAGCAACAGAGGCCAGGTTGCAG 1037241 Query 80923 ACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTA 80982 || || ||||| || | | | || |||||| |||||| ||||||| || || Sbjct 1037240 ACAGCGACCTCATCGGGAGCAGTGTACTCGATGATTTCAGTGCACAGGTTGGAGCTGCGG 1037181 Query 80983 ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTAC 81042 || ||||| ||||| |||||||| ||| |||| ||| ||||||||| |||| | Sbjct 1037180 ATGGTACCAAGGTTCTTCTGGTTGCTCTTCCTGTTGGCAGCATCCTTGTAGAGCATGAAG 1037121 Query 81043 GGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACC 81102 ||| ||||||||||| ||| | || ||| ||||||| ||| | || | || ||| Sbjct 1037120 GGGTTACCGGTCTCGGTCTGAGCCTCGAGAATGGCGTACCAGAGCTTCTGAGCACGGACA 1037061 Query 81103 ACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCG 81162 || || ||||| | | | ||||| |||| || |||||| | ||||| Sbjct 1037060 GTCTCACGACCCTTGCCCGCTTTCTCGTACTTCTCGTACAGGGCGACGAACTCGTCACCG 1037001 Query 81163 TGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTC 81222 | | |||| |||| | ||||||||||| |||||||| || ||| ||| || | | Sbjct 1037000 TAGACGTCAGCGAGGCCAGGGCACTCGTTGGGGCACATGAGTGTCCACTCGCCGTTCTGC 1036941 Query 81223 TCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGC 81282 | ||| || |||||| || |||||||| || ||| ||| || |||||| ||| Sbjct 1036940 TGGACACGCTCCATGAAGAGATCGGGGATCCACAGAGCGTAGAAGAGATCGCGGGCGCGA 1036881 Query 81283 GCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCAT 81342 ||||||| | || ||||| | | ||||| ||| | | || ||| || |||||| Sbjct 1036880 ACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAAGCCGAAGACGTCAGCGTGCCAT 1036821 Query 81343 GGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTAACGG 81399 ||||| || || | ||||| | || ||| ||||||||||| |||||| ||| Sbjct 1036820 GGCTCGAGGTAGATGGCGAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGG 1036761 Query 81400 GCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCC 81459 ||||| ||| | ||||| | ||| ||||||| ||| | || ||||| || || Sbjct 1036760 GCAGTGTTGTTGTAGACACGGAGCATGGGGATGAGACCGTTCGATGTTCCGTTGGTTCCT 1036701 Query 81460 ACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATGCCACCTGACC 81517 |||| || || |||| || | | || ||| || || || || || | Sbjct 1036700 CCGATGTAGGAGCCAGTGGCACGAATGCGGTGGACGTTG--AGGCCAATTCCGCCAGCAG 1036643 Query 81518 ACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTT 81577 ||| || ||| || || || | || || || || ||||||||||| || | | Sbjct 1036642 TCTTGGAGATCAACGCGCAGGTCTTGAGTGTGTCGTAGATGCCCTCGATGCTGTCCTCCT 1036583 Query 81578 TCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTG 81637 ||||||| | | ||| ||| |||||||| || || |||||| ||||| || | Sbjct 1036582 TCATGTCGATGAGGAAGCAGGACGACATCTGCGGCGAGGGTGTGCCGGCGTTGAAGAGCG 1036523 Query 81638 TTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTG 81697 | || | ||||| |||| || | ||||| ||| || || || || | Sbjct 1036522 TCGGCGAGGCGTGTGTGAAGTACTTCTGCGACATGTAGTCGTATGTCTCGATGGCCTTCT 1036463 Query 81698 GAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTG-GGGCGTCTCG 81756 || || || ||| || |||| || |||||||| | ||||| ||| ||||| |||| Sbjct 1036462 CGATGTCCTCCATGTGGATGCCGACGGCAACACGCATGAGCATGTGCTGCGGGCG-CTCG 1036404 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || || ||||||||||| |||||||| || ||||||||| | |||||| || Sbjct 1038137 GTACGGAGGTAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTGCATGGAT 1038078 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||| ||| | | || || | || |||| ||||||||| |||||||||||| |||| Sbjct 1038077 GTGATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTCAGGGACTGAGACTGATCGATG 1038018 Query 80158 AAAGCCCCACGATCTGCCGCCAT 80180 || || ||||| || || ||||| Sbjct 1038017 AAGGCACCACGGTCAGCGGCCAT 1037995 >seq4 Length=1699079 Score = 172 bits (190), Expect = 6e-38 Identities = 160/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || ||||| ||||| ||||| |||| ||||| || | ||| | Sbjct 982342 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGATACCATTGACAACGTCAAGTCG 982401 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || || ||||||||||| || |||||||| ||||||||||| ||||| ||||| ||| Sbjct 982402 AAGATCCAAGACAAGGAGGGTATCCCTCCAGATCAGCAGCGTCTGATTTTCGCTGGCAAG 982461 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||| ||||||| |||||| | | ||||| || |||| ||||| ||||| || ||| Sbjct 982462 CAACTTGAGGATGGCCGTACCTTGTCCGACTACAACATCCAGAAGGAGTCCACACTGCAT 982521 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| |||| || |||||||| Sbjct 982522 CTCGTCCTGCGCCTGCGCGGTGG 982544 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || |||||||| |||||| Sbjct 982546 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCCTTGAGGTGGAGTCATCC 982605 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||| || |||||||||||||| || || || || || ||| Sbjct 982606 GACACTATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAAGGCATCCCCCCTGATCAG 982665 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || || || ||||||||||| || ||||||| ||| || || | ||||| ||| Sbjct 982666 CAACGCCTTATCTTCGCTGGTAAGCAGCTAGAGGATGGTCGCACACTCTCGGACTACAAT 982725 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||||||||| || || | || | ||||| || ||||| Sbjct 982726 ATTCAGAAGGAATCCACACTCCACTTGGTGCTCCGTCTCCGTGGTGG 982772 Score = 154 bits (170), Expect = 2e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||||||||| || ||||||||||| || || | ||||| ||||| | Sbjct 982774 ATGCAAATTTTTGTCAAGACCCTCACCGGCAAGACCATCACATTGGAGGTCGAGTCCAGC 982833 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| |||| |||||||| |||||||| || ||||| |||||| Sbjct 982834 GACACGATCGACAACGTAAAGTCTAAGATTCAGGATAAGGAGGGCATCCCTCCTGACCAG 982893 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || || ||||| || ||||| | || || | ||| || || | |||||||| Sbjct 982894 CAACGCCTCATCTTTGCCGGCAAGCAGTTGGAAGACGGTCGCACGCTTTCCGACTATAAC 982953 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || || || || | || | |||||||| |||||||| Sbjct 982954 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTTCGTCTTCGTGGTGGACA 983003 Score = 136 bits (150), Expect = 5e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| ||||| || || |||||||| |||||| || | || | ||| | ||| Sbjct 982058 ACCGGTAAGACGATCACCCTTGAGGTGGAGTCATCCGACACTATCGACAATGTCAAGAGC 982117 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || |||||||||||||| || || || |||||||||||||| | || || || || ||| Sbjct 982118 AAGATTCAGGACAAGGAAGGCATCCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCAAG 982177 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||||| |||||| | | || || || | || ||||| ||||||||||| Sbjct 982178 CAGCTCGAGGATGGTCGTACTTTGTCCGATTACAACATTCAGAAGGAGTCCACTCTTCAC 982237 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || ||||| ||||| Sbjct 982238 CTCGTCCTCCGCCTTCGTGGTGG 982260 >seq13 Length=1247346 Score = 113 bits (124), Expect = 5e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || || |||||||||||||| ||||| || ||||||||||| | || Sbjct 565459 AATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATC 565518 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 ||||| || ||||| |||||||| | || ||||| | ||||| || |||| ||||| Sbjct 565519 TTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAG 565578 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| || || ||| | || || || ||||| Sbjct 565579 TCGACTCTCCACCTGGTCCTCCGCCTCCGTGGTGG 565613 >seq20 Length=976498 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| ||||| || |||||||||||||| || || || || ||||| |||||| Sbjct 715890 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAG 715831 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || ||||| | ||||| || |||| ||||| |||||||| || || || | Sbjct 715830 GATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTC 715771 Query 27619 CGTCTTCGCGGTGG 27632 || || || ||||| Sbjct 715770 CGCCTGCGTGGTGG 715757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308845904160