Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4 105 6e-18 >seq4 Length=1699079 Score = 105 bits (116), Expect = 6e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 ||||| ||| | || || ||||| ||||| | |||||| | || || | ||||| Sbjct 982058 ACCGGTAAGACGATCACCCTTGAGGTGGAGTCATCCGACACTATCGACAATGTCAAGAGC 982117 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || ||||| ||||| |||||||| || || || || ||||| || || | ||||||||| Sbjct 982118 AAGATTCAGGACAAGGAAGGCATCCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCAAG 982177 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGAC 27184 || | || || || || | ||||||||||||||||| |||||||| || Sbjct 982178 CAGCTCGAGGATGGTCGTACTTTGTCCGATTACAACATTCAGAAGGAGTCCAC 982230 Score = 105 bits (116), Expect = 6e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 ||||||||||| | || ||||| || || || | ||||| | ||||| | ||||| Sbjct 982340 TGACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGATACCATTGACAACGTCAAGT 982399 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || || |||||||| || || || || || ||||| |||||| | || | ||| |||| Sbjct 982400 CGAAGATCCAAGACAAGGAGGGTATCCCTCCAGATCAGCAGCGTCTGATTTTCGCTGGCA 982459 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 | ||| | || || | ||| | ||||| |||||||| || |||||||| || | | Sbjct 982460 AGCAACTTGAGGATGGCCGTACCTTGTCCGACTACAACATCCAGAAGGAGTCCACACTGC 982519 Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || | || |||| |||| ||||| || Sbjct 982520 ATCTCGTCCTGCGCCTGCGCGGTGGTAT 982547 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || ||||||||| | || || | || || || | | Sbjct 982774 ATGCAAATTTTTGTCAAGACCCTCACCGGCAAGACCATCACATTGGAGGTCGAGTCCAGC 982833 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || ||||| || || || ||||| || || || || Sbjct 982834 GACACGATCGACAACGTAAAGTCTAAGATTCAGGATAAGGAGGGCATCCCTCCTGACCAG 982893 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | |||||||| || ||||||||| || || ||||||| || ||| Sbjct 982894 CAACGCCTCATCTTTGCCGGCAAGCAGTTGGAAGACGGTCGCACGCTTTCCGACTATAAC 982953 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||||||||| | || ||||| | ||| | || ||||| Sbjct 982954 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTTCGTCTTCGTGGTGG 983000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917214847360