Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq4 152 1e-31 seq9 114 3e-20 seq13 109 1e-18 seq20 102 2e-16 >seq4 Length=1699079 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| || || ||||| || ||||||||||| || | ||| || Sbjct 982995 ACGAAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCGGAAAGCGT 982936 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || ||||||| ||||||||| || ||||| |||||||| ||||||||||| | || Sbjct 982935 GCGACCGTCTTCCAACTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCAGGAGGGATGCC 982876 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| ||||| ||||| || ||||| ||||| ||||| | || ||||| | Sbjct 982875 CTCCTTATCCTGAATCTTAGACTTTACGTTGTCGATCGTGTCGCTGGACTCGACCTCCAA 982816 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||| ||||| ||||| | ||||| Sbjct 982815 TGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAAATTTGCAT 982774 Score = 149 bits (164), Expect = 1e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| ||||||||||||||||| || || ||||| ||||| | | || Sbjct 982255 ACGAAGGCGGAGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCGGACAAAGT 982196 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || ||||||||||| |||||||| | ||| || ||||| || || | || Sbjct 982195 ACGACCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATGCC 982136 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||| ||||| || || || ||||| ||||| || || ||||| || Sbjct 982135 TTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATAGTGTCGGATGACTCCACCTCAAG 982076 Query 211073 AGTGATCGTCTTTCCCGTGA 211092 ||||||||||| || |||| Sbjct 982075 GGTGATCGTCTTACCGGTGA 982056 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||| || || || || || || |||| || || | ||||| Sbjct 982757 AGCACCAAGTGGAGTGTGGATTCCTTCTGAATATTGTAGTCCGAGAGTGTGCGACCATCC 982698 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || ||||||||||||||||| || ||||| || | |||||||||||| Sbjct 982697 TCTAGCTGCTTACCAGCGAAGATAAGGCGTTGCTGATCAGGGGGGATGCCTTCCTTGTCC 982638 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||| ||||| || || ||||| || ||||||||| Sbjct 982637 TGAATCTTGCTCTTGACATTGTCGATAGTGTCGGATGACTCCACCTCAAGGGTGATCGTC 982578 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 982577 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 982546 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || |||||||| || |||||||| || || | | ||| | ||||| Sbjct 982529 AGGACGAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCC 982470 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| ||||| || || || || || || ||||| | || |||||||| Sbjct 982469 TCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGAGGGATACCCTCCTTGTCT 982410 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || ||||| || ||| || |||||||||||||| ||| Sbjct 982409 TGGATCTTCGACTTGACGTTGTCAATGGTATCGGAGGACTCGACCTCGAGAGTGATGGTC 982350 Query 211083 TTTCCCGT 211090 || || || Sbjct 982349 TTGCCGGT 982342 >seq9 Length=1465676 Score = 114 bits (126), Expect = 3e-20 Identities = 192/278 (69%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATT 178147 |||| |||||| ||||||||||| ||| ||||| ||||| |||||||| | Sbjct 1037174 CCAAGGTTCTTCTGGTTGCTCTTCCTGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTA 1037115 Query 178148 CCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTT 178207 || ||| | |||||| |||||||| | ||| |||| ||| || |||||||||| Sbjct 1037114 CCGGTCTCGGTCTGAGCCTCGAGAATGGCGTACCAGAGCTTCTGAGCACGGACAGTCTCA 1037055 Query 178208 TTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACA 178267 | || || | ||||||||||| | ||| || | |||| || || ||||| Sbjct 1037054 CGACCCTTGCCCGCTTTCTCGTACTTCTCGTACAGGGCGACGAACTCGTCACCGTAGACG 1036995 Query 178268 TCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACT 178327 ||| |||| || || ||| |||||||| | ||| |||||| |||| | || || Sbjct 1036994 TCAGCGAGGCCAGGGCACTCGTTGGGGCACATGAGTGTCCACTCGCCGTTCTGCTGGACA 1036935 Query 178328 CGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 || | ||||||||| || | | |||| | || ||||| Sbjct 1036934 CGCTCCATGAAGAGATCGGGGATCCACAGAGCGTAGAA 1036897 >seq13 Length=1247346 Score = 109 bits (120), Expect = 1e-18 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||| ||||| || |||||||| || || | ||||| | || || Sbjct 565598 AGGACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 565539 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| | ||| || ||||| || |||| || ||||||||| Sbjct 565538 TCGAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 565479 Query 211023 TGGATCTT 211030 |||||||| Sbjct 565478 TGGATCTT 565471 >seq20 Length=976498 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| ||||||||||| || |||||||| || || | ||||| | ||||| Sbjct 715772 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 715831 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||||||||| |||||||| || || || ||||| || |||| || |||||||| Sbjct 715832 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 715890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159148762343570