Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq4 89.7 3e-13 >seq4 Length=1699079 Score = 89.7 bits (98), Expect = 3e-13 Identities = 127/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 23633 TCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAA 23691 |||| || || |||||||| || || || || || | |||||| | || ||| | || | Sbjct 982056 TCACCGGTAAGACGATCACCCTTGAGGTGGAGTCATCCGACACTATCGACAATGTCAAGA 982115 Query 23692 CAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGC 23751 || | || ||||| ||||| | || ||||| || ||||| || || || |||||| Sbjct 982116 GCAAGA-TTCAGGACAAGGAAGGCATCCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGC 982174 Query 23752 AAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 || || || || || | || ||||| |||||||||||| || || |||||||| Sbjct 982175 AAGCAGCTCGAGGATGGTCGTACTTTGTCCGATTACAACATTCAGAAGGAGTCCAC 982230 Score = 82.4 bits (90), Expect = 5e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694 || || || || ||||||||||| || || ||| | || || |||| | | || Sbjct 982342 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGATACCATTGACAACGTCAAGTCG 982401 Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 || || ||||| || ||| | || |||||||| |||||| | || || || ||||| Sbjct 982402 AAGATCCAAGACAAGGAGGGTATCCCTCCAGATCAGCAGCGTCTGATTTTCGCTGGCAAG 982461 Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACAT 23814 ||||| || || | || || || ||| |||||||| || || ||||||||| | ||| Sbjct 982462 CAACTTGAGGATGGCCGTACCTTGTCCGACTACAACATCCAGAAGGAGTCCACACTGCAT 982521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008701950744