Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4 143 6e-29 seq20 95.1 3e-14 seq13 91.5 4e-13 >seq4 Length=1699079 Score = 143 bits (158), Expect = 6e-29 Identities = 160/214 (75%), Gaps = 5/214 (2%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| ||||| |||||||| || || || | |||||||||| |||||| Sbjct 982255 ACGAAGGCGGAGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCGGACAAAGT 982196 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || |||||||| | || || ||||| || || || || Sbjct 982195 ACGACCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATGCC 982136 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || ||||| ||| ||| ||||| ||||| || | ||||| || | Sbjct 982135 TTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATAGTGTCGGATGACTCCACCTCAAG 982076 Query 225672 CGTGATCGTCTTGCCCGT-----CAAAGTTTTTA 225700 ||||||||||| || || ||||||| ||| Sbjct 982075 GGTGATCGTCTTACCGGTGACTGCAAAGTTGTTA 982042 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| |||||||| || || | |||||| || | | || | ||||| Sbjct 982757 AGCACCAAGTGGAGTGTGGATTCCTTCTGAATATTGTAGTCCGAGAGTGTGCGACCATCC 982698 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 ||||||||||| |||||||||||||| ||||| || || || || || ||||||||||| Sbjct 982697 TCTAGCTGCTTACCAGCGAAGATAAGGCGTTGCTGATCAGGGGGGATGCCTTCCTTGTCC 982638 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| ||||| ||||| || | ||||| || | ||||||||| Sbjct 982637 TGAATCTTGCTCTTGACATTGTCGATAGTGTCGGATGACTCCACCTCAAGGGTGATCGTC 982578 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | ||||| Sbjct 982577 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 982546 Score = 125 bits (138), Expect = 2e-23 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| || || || ||||| || || |||| ||||| |||| ||| || Sbjct 982538 CGCAGGCGCAGGACGAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTA 982479 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || || ||||| |||||||| || || || || || || || || ||||| Sbjct 982478 CGGCCATCCTCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGAGGGATACCC 982419 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||| || || ||||| || |||| || || || | Sbjct 982418 TCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATGGTATCGGAGGACTCGACCTCGAGA 982359 Query 225673 GTGATCGTCTTGCCCGTCA 225691 ||||| |||||||| |||| Sbjct 982358 GTGATGGTCTTGCCGGTCA 982340 >seq20 Length=976498 Score = 95.1 bits (104), Expect = 3e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||||||||| || || |||| ||||| |||| | || | ||||| Sbjct 715772 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 715831 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| || ||||| || ||||||||| Sbjct 715832 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCT 715891 >seq13 Length=1247346 Score = 91.5 bits (100), Expect = 4e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||||||||| || || || |||| ||||| |||| | || | || || Sbjct 565598 AGGACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 565539 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| | || || ||||| || ||||| || |||||||| Sbjct 565538 TCGAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 565479 Query 225622 TGGATCTT 225629 |||||||| Sbjct 565478 TGGATCTT 565471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192527869111292