Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq4 122 6e-23 seq13 95.1 9e-15 seq20 86.0 5e-12 >seq4 Length=1699079 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| ||||| |||||| |||||||| || |||| || ||| |||| || Sbjct 982983 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGACCGTCTTC 982924 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| ||||||||||| | || ||||| || | ||| | || ||||| ||| Sbjct 982923 CAACTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCAGGAGGGATGCCCTCCTTATCCTG 982864 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | || |||||| ||| || ||||||| || || ||||| Sbjct 982863 AATCTTAGACTTTACGTTGTCGATCGTGTCGCTGGACTCGACCTCCAATGTGATGGTCTT 982804 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||||||| || || |||||||| Sbjct 982803 GCCGGTGAGGGTCTTGACAAAAATTTGCAT 982774 Score = 120 bits (132), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || ||| ||||| || || ||||| || | |||| ||| | || || Sbjct 982755 CACCAAGTGGAGTGTGGATTCCTTCTGAATATTGTAGTCCGAGAGTGTGCGACCATCCTC 982696 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || ||||| | || |||||||| | || | |||||||| ||| Sbjct 982695 TAGCTGCTTACCAGCGAAGATAAGGCGTTGCTGATCAGGGGGGATGCCTTCCTTGTCCTG 982636 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| || ||| | || ||||||| || |||||||| | || |||||| Sbjct 982635 AATCTTGCTCTTGACATTGT--CGATAGTGTCGGATGACTCCACCTCAAGGGTGATCGTC 982578 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||||||||| |||||||| ||||| Sbjct 982577 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 982546 Score = 111 bits (122), Expect = 1e-19 Identities = 139/189 (74%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||| |||||| || ||||||||||||| | || | || || Sbjct 982242 ACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCGGACAAAGTACGACCATCCTCG 982183 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| |||||||| |||||||| |||| || | |||||||| ||| Sbjct 982182 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGA 982123 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | || ||||||| || |||||||| | || ||||||| Sbjct 982122 ATCTTGCTCTTGACATTGT--CGATAGTGTCGGATGACTCCACCTCAAGGGTGATCGTCT 982065 Query 44307 TTCCCGTGA 44315 | || |||| Sbjct 982064 TACCGGTGA 982056 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || || || || || ||| |||||| ||||||||||| || Sbjct 982548 CATACCACCGCGCAGGCGCAGGACGAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTC 982489 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 || | || | || | || || || ||||| || || || |||| |||||||||||||| Sbjct 982488 GGACAAGGTACGGC-CATCCTCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTG 982430 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 ||| | ||| ||||| || |||||| ||| | | | ||||| |||| ||| | Sbjct 982429 GAGGGATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATGGTATCGGAGGACT 982370 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGT 44313 | ||||| | || || ||||| || || Sbjct 982369 CGACCTCGAGAGTGATGGTCTTGCCGGT 982342 >seq13 Length=1247346 Score = 95.1 bits (104), Expect = 9e-15 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || || |||||| ||||||||||| |||| ||| ||| |||| || Sbjct 565595 ACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 565536 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| |||||||||||||| |||||||| || | || | || ||||| ||| Sbjct 565535 AGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 565476 Query 44249 ATCTT 44253 ||||| Sbjct 565475 ATCTT 565471 >seq20 Length=976498 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| || ||| |||||| ||||||||||| |||| ||| ||| | || || Sbjct 715774 CACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTC 715833 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 |||||||| ||||| ||||| | ||||||||| || | || | || ||||| || Sbjct 715834 GAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 715890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989443550506