Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq4 143 2e-29 seq20 134 1e-26 seq13 132 4e-26 >seq4 Length=1699079 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| |||||||| ||||||||| |||||||||||||| Sbjct 983000 CCACCACGAAGACGAAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCGGAA 982941 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || | |||||||||||| || || ||||| || ||||| | || Sbjct 982940 AGCGTGCGACCGTCTTCCAACTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCAGGAGGG 982881 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||| ||| ||| | || | | ||| | | | |||||||| ||||| || Sbjct 982880 ATGCCCTCCTTATCC-TGAATCTTAGACTTTACGTTGTCGATCGTGTCGCTGGACTCGAC 982822 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || || ||||| || ||||| ||||| Sbjct 982821 CTCCAATGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAAATTTGCAT 982774 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| ||||||||||| || ||||| ||| Sbjct 982772 CCACCACGGAGACGGAGCACCAAGTGGAGTGTGGATTCCTTCTGAATATTGTAGTCCGAG 982713 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || |||||||| || ||||| || ||||| || || || | ||| Sbjct 982712 AGTGTGCGACCATCCTCTAGCTGCTTACCAGCGAAGATAAGGCGTTGCTGATCAGGGGGG 982653 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || ||||||||| || || ||| || | || | ||||||| ||||||| Sbjct 982652 ATGCCTTCCTTGTCCTGAATCTTGCTCTTGACATTGTCG--ATAGTGTCGGATGACTCCA 982595 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || ||||| || || || || ||||| ||||| |||||||| Sbjct 982594 CCTCAAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 982546 Score = 113 bits (124), Expect = 4e-20 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || || ||| ||||||||||||||| || ||||| Sbjct 982260 CCACCACGAAGGCGGAGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCGGAC 982201 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || |||||||||||||||||||| |||| |||||| ||||| | ||| Sbjct 982200 AAAGTACGACCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGG 982141 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || ||||||||| || || ||| || | || | ||||||| ||||||| Sbjct 982140 ATGCCTTCCTTGTCCTGAATCTTGCTCTTGACATTGTCG--ATAGTGTCGGATGACTCCA 982083 Query 41814 CCTCCACCGTTATCGTTTTACCCGT 41838 |||| | || ||||| ||||| || Sbjct 982082 CCTCAAGGGTGATCGTCTTACCGGT 982058 >seq20 Length=976498 Score = 134 bits (148), Expect = 1e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || || || | |||||| || || ||| ||||||||| ||||| |||||| Sbjct 715754 CCACCACCACGCAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCG 715813 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 ||||||||||| | || |||||||||||||||||||| || || ||||| ||||||| | Sbjct 715814 GAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGG 715873 Query 41753 GGAACGCTCTCCTTGTC 41769 |||| || ||||||||| Sbjct 715874 GGAATGCCCTCCTTGTC 715890 >seq13 Length=1247346 Score = 132 bits (146), Expect = 4e-26 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || || ||||||||| ||||| ||||||||| Sbjct 565613 CCACCACGGAGGCGGAGGACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 565554 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| ||||||||||||||||| || |||| |||||| ||||||| |||| Sbjct 565553 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGGGGA 565494 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | || |||||||||| ||| || Sbjct 565493 ATGCCCTCCTTGTCCTGGATCTT 565471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302740221600