Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20capitalensis_20[genbank_20GCA_5F001604925.1_202016-
03-31] 1,341 sequences; 32,454,403 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq546 145 9e-30
seq496 86.0 7e-12
>seq546
Length=57559
Score = 145 bits (160), Expect = 9e-30
Identities = 433/664 (65%), Gaps = 8/664 (1%)
Strand=Plus/Plus
Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069
||| || |||| | || ||| || ||||| || ||||| |||||||| | || |||
Sbjct 43543 CCATTCACCGTTTTGCTCCACACGCTTCATGAACAGATCGGGAATCCACAACGCGTAAAA 43602
Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129
|| || | | | ||||| ||||| ||||| ||| |||||||| | |
Sbjct 43603 GAGGTCGCGCGCGCGGACCTCCTCCTTTCCGTGGTTCTTGCGAAGGTCGAGGAAGGGGAA 43662
Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189
| |||| ||||| || |||| ||| |||| | | | ||||| || ||||| || ||
Sbjct 43663 GACGTCAGCGTGCCAAGGCTCCAGGTAGATGGCAAAAGCACCAGGACGCTTGTTGCCACC 43722
Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249
|| || | ||| | ||| ||||| || || |||| | ||| ||||| | || |||||
Sbjct 43723 TTGGTCGACGTAGCGAGCAGTGTTGTTGTAGACTCGGAGCATGGGAATCAGGCCGTTGGA 43782
Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGA 54307
| ||| ||||| || | || ||| || ||| ||||||| | |||| ||
Sbjct 43783 GGTACCGTTGGTGCCAGCAATGTAGGAGCCTGTGGAACGAATACGGTGGACGTTGA--GA 43840
Query 54308 CCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 54367
|| || || || ||| | || || || | || || || | || || || || |||
Sbjct 43841 CCAATTCCACCGGCCGTCTTGGAAATCATAGCACAAGTCTTGAGAGTGTCGTAAATACCC 43900
Query 54368 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 54427
|| || || || ||| |||||| | | || || | | ||| | ||
Sbjct 43901 TCGATGCTGTCCTCCTTCATGTCGATCAAGAAGCATGATGCAAGCTGGGGCTTGGGGGTA 43960
Query 54428 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 54487
|| || || || ||||| || || || || ||||| || ||||| || | | ||||||
Sbjct 43961 CCAGCGTTGAACAAGGTGGGGGAGGCATGAGTAAAGCACTTTTCCGACATCAACTTGTAC 44020
Query 54488 GTCTCGATAGCTGAGTCTATATCCCATTGA--TGAATTCCTACTGCGACACGCATTAACA 54545
|| |||| || | || ||| | | | || || || || || |||||||| | ||
Sbjct 44021 GTTTCGAGGGC--ACTCGTTATGTCTTCGCCGTGGATACCGACAGCAACACGCATGATCA 44078
Query 54546 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAG 54605
||||||| |||||||| | | ||| || || |||||||| || | |||| |
Sbjct 44079 TGTGCTGCGGTCTTTCGGCAACTTTGCCATTGATGCGAAGCAAGTATGACCTCTCCAGTG 44138
Query 54606 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTT 54665
| || ||||||||||| | ||| ||||| || ||||| | || | |||||||| |
Sbjct 44139 TCTTGAAACCAAAATATTGGTAGTTGAAGTCACGGTCGTAGACGATGGCGGAGTTGAGCT 44198
Query 54666 TATC 54669
|||
Sbjct 44199 CATC 44202
>seq496
Length=30664
Score = 86.0 bits (94), Expect = 7e-12
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 24177 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 24236
|||||||| || || || || ||||| ||||||||||| || ||||| || ||||||||
Sbjct 5498 TCGTTGGAGAAGGTAAGGCCAGGCATCAGGCCACGCTTCTTGAGCCAGAAGATGGACGCG 5439
Query 24237 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAG 24283
|| || || ||||| || || || || || ||||||||||| ||
Sbjct 5438 AAGGAACCGCTGAAGAAGATACCCTCGACAGCAGCAAAGGCAATCAG 5392
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593711647741680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |