Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20capitalensis_20[genbank_20GCA_5F001604925.1_202016- 03-31] 1,341 sequences; 32,454,403 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq546 145 9e-30 seq496 86.0 7e-12 >seq546 Length=57559 Score = 145 bits (160), Expect = 9e-30 Identities = 433/664 (65%), Gaps = 8/664 (1%) Strand=Plus/Plus Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||| || |||| | || ||| || ||||| || ||||| |||||||| | || ||| Sbjct 43543 CCATTCACCGTTTTGCTCCACACGCTTCATGAACAGATCGGGAATCCACAACGCGTAAAA 43602 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 || || | | | ||||| ||||| ||||| ||| |||||||| | | Sbjct 43603 GAGGTCGCGCGCGCGGACCTCCTCCTTTCCGTGGTTCTTGCGAAGGTCGAGGAAGGGGAA 43662 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 | |||| ||||| || |||| ||| |||| | | | ||||| || ||||| || || Sbjct 43663 GACGTCAGCGTGCCAAGGCTCCAGGTAGATGGCAAAAGCACCAGGACGCTTGTTGCCACC 43722 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 || || | ||| | ||| ||||| || || |||| | ||| ||||| | || ||||| Sbjct 43723 TTGGTCGACGTAGCGAGCAGTGTTGTTGTAGACTCGGAGCATGGGAATCAGGCCGTTGGA 43782 Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGA 54307 | ||| ||||| || | || ||| || ||| ||||||| | |||| || Sbjct 43783 GGTACCGTTGGTGCCAGCAATGTAGGAGCCTGTGGAACGAATACGGTGGACGTTGA--GA 43840 Query 54308 CCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 54367 || || || || ||| | || || || | || || || | || || || || ||| Sbjct 43841 CCAATTCCACCGGCCGTCTTGGAAATCATAGCACAAGTCTTGAGAGTGTCGTAAATACCC 43900 Query 54368 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 54427 || || || || ||| |||||| | | || || | | ||| | || Sbjct 43901 TCGATGCTGTCCTCCTTCATGTCGATCAAGAAGCATGATGCAAGCTGGGGCTTGGGGGTA 43960 Query 54428 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 54487 || || || || ||||| || || || || ||||| || ||||| || | | |||||| Sbjct 43961 CCAGCGTTGAACAAGGTGGGGGAGGCATGAGTAAAGCACTTTTCCGACATCAACTTGTAC 44020 Query 54488 GTCTCGATAGCTGAGTCTATATCCCATTGA--TGAATTCCTACTGCGACACGCATTAACA 54545 || |||| || | || ||| | | | || || || || || |||||||| | || Sbjct 44021 GTTTCGAGGGC--ACTCGTTATGTCTTCGCCGTGGATACCGACAGCAACACGCATGATCA 44078 Query 54546 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAG 54605 ||||||| |||||||| | | ||| || || |||||||| || | |||| | Sbjct 44079 TGTGCTGCGGTCTTTCGGCAACTTTGCCATTGATGCGAAGCAAGTATGACCTCTCCAGTG 44138 Query 54606 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTT 54665 | || ||||||||||| | ||| ||||| || ||||| | || | |||||||| | Sbjct 44139 TCTTGAAACCAAAATATTGGTAGTTGAAGTCACGGTCGTAGACGATGGCGGAGTTGAGCT 44198 Query 54666 TATC 54669 ||| Sbjct 44199 CATC 44202 >seq496 Length=30664 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 24177 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 24236 |||||||| || || || || ||||| ||||||||||| || ||||| || |||||||| Sbjct 5498 TCGTTGGAGAAGGTAAGGCCAGGCATCAGGCCACGCTTCTTGAGCCAGAAGATGGACGCG 5439 Query 24237 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAG 24283 || || || ||||| || || || || || ||||||||||| || Sbjct 5438 AAGGAACCGCTGAAGAAGATACCCTCGACAGCAGCAAAGGCAATCAG 5392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593711647741680