Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20capitalensis_20[genbank_20GCA_5F001604925.1_202016- 03-31] 1,341 sequences; 32,454,403 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq496 196 5e-45 seq731 149 6e-31 seq670 141 1e-28 seq923 107 2e-18 seq363 107 2e-18 >seq496 Length=30664 Score = 196 bits (216), Expect = 5e-45 Identities = 217/286 (76%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| ||||||||||||| |||||| | || ||| Sbjct 4937 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCTGAGGAGATTGATCTG 4996 Query 116696 TCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| |||||| | ||| |||| || ||||||| |||||| Sbjct 4997 TCCAAGGACCTTCATGACTGGAACAAGCGTCTGAATGATGACGAGCGTTTCTTCATCTCT 5056 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || ||||| ||||| || |||||||| ||||||||||| |||||||||| Sbjct 5057 CACGTCCTTGCCTTCTTCGCTGCATCGGACGGCATTGTCAACGAGAACTTGGTCGAGCGC 5116 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| |||| ||||| ||| | ||||||| || |||||||||||||| ||||| || Sbjct 5117 TTCAGCTC-CGAGGTTCAGATCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATTATGAT 5175 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||| | ||||| || | || ||| | | |||||||||||| Sbjct 5176 GGAGAACATTCACTCCGAGACTTACTCGCTCTTGATCGACACGTAC 5221 Score = 156 bits (172), Expect = 4e-33 Identities = 315/457 (69%), Gaps = 14/457 (3%) Strand=Plus/Plus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-C 117027 || ||| |||| | |||||||| ||||| || ||||||||| | || ||| || | Sbjct 5320 CCCTGCATCAAGAAAAAGGCCGACTGGGCCCTCCGCTGGATCTGTGACA-AGAACTCGAC 5378 Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 ||| | || ||| | ||||| || || |||||||| ||||||| || || Sbjct 5379 CTTTGCATCCCGTCTGATTGCCTTTGCTGCTGTCGAGGGTATCTTCTTCAGCGGTTCCTT 5438 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGA 117147 ||| |||| || ||||||||||| || ||||| ||||| ||||| || ||| |||||| Sbjct 5439 CGCGTCCATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGCCTTACCTTCTCCAACGA 5498 Query 117148 GCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTT 117207 |||||||||| | |||||||| |||| |||||||||||| |||| ||| || | Sbjct 5499 GCTCATCTCCCGTGACGAGGGCATGCACACCGACTTTGCCTGCCTGCTCTTCTCTCACAT 5558 Query 117208 GGTGCAGCGACCGAG-CGCGGCGCGCGTCAG-GGA---GATCGTCACCGACGCGGTCGCC 117262 || | || || | || || | | | ||| |||| ||||||| || |||| Sbjct 5559 ----CA-AGTCCAAGCCTTCGCCCGAGACTGTGGAGAGGATCATCACCGAGGCCGTCGAG 5613 Query 117263 ATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAA 117322 || ||||| ||||| ||||| || || || || ||||| || | || || | Sbjct 5614 ATGGAGCAAGAGTTCCTTACCGACGCTCTTCCCGTCGCCCTGCTCGGCATGAA-CGCTAC 5672 Query 117323 AC-GATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGC 117381 | |||| || ||||||||||| || |||||| | |||||| | | || | | | Sbjct 5673 CCTCATGTGCCAGTACATCGAGTTTGTTGCCGACCGCCTGCTGGTGGCTCTTGGCAACAA 5732 Query 117382 CAAGCACTACAACACGCCCAACCCGCTGGACTTTATG 117418 ||| ||||||| || ||||||| | ||||| ||| Sbjct 5733 GAAGTTCTACAACTCGACCAACCCCTTCGACTTCATG 5769 >seq731 Length=88763 Score = 149 bits (164), Expect = 6e-31 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771 |||| ||||| ||||||||| | || ||||| || |||||| | | | | | ||| Sbjct 88165 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAATGTGAAGT 88224 Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 || |||| ||||| |||||||| ||| |||||||||| || || |||| ||| |||| Sbjct 88225 CCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTTATCTTCGCTGGCA 88284 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891 | ||||| || |||| ||||||||| |||||||||||||||||||||| | ||||| | Sbjct 88285 AGCAGCTTGAGGACGGTCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACGCTCC 88344 Query 40892 ATCTAGTGTTGCGCTTGAGGGGCGG 40916 | || || | ||| || | ||||| Sbjct 88345 ACCTCGTCCTCCGCCTGCGTGGCGG 88369 Score = 145 bits (160), Expect = 8e-30 Identities = 150/194 (77%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| ||||||||| |||| ||||| | | |||| | | | |||| ||||| Sbjct 88449 TCACCGGCAAGACCATCACCCTCGAAGTCGAGTCTTCGGACACCATCGACAACG-TCAAG 88507 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| ||||||||||| |||||||||| || ||||||| ||| ||| Sbjct 88508 TCGAAGATCCAAGACAAGGAGGGCATCCCTCCGGACCAGCAGCGCCTCATCTTCGCTGGC 88567 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || |||| |||||||| |||||||||||||||||||||| |||| || Sbjct 88568 AAGCAGCTTGAGGACGGTCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCCACTCTC 88627 Query 40891 CATCTAGTGTTGCG 40904 || || || |||| Sbjct 88628 CACCTCGTCCTGCG 88641 >seq670 Length=49272 Score = 141 bits (156), Expect = 1e-28 Identities = 140/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| |||| ||||| || | |||| | | Sbjct 38588 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 38529 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| |||||||||| || || Sbjct 38528 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 38469 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || |||| ||||||||| ||||||||||||||||||| Sbjct 38468 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 38409 Query 40879 G 40879 | Sbjct 38408 G 38408 >seq923 Length=2568 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || || ||||| |||| |||||| | | Sbjct 102 ATGCAGATCTTCGTCAAGACCCTGACCGGAAAGACGATCACGCTCGAGGTCGAATCTTCG 161 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || |||| ||||| || |||| ||||| ||||||||||| | ||||| Sbjct 162 GATACGATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCA 220 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| ||||| || || | | || | |||||||| Sbjct 221 GCAGCGCTTGATCTTCGCAGGCAAGCAGCTCGAGGATGGCAGGACGTTGTCGGACTACAA 280 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||||| | || |||||| | ||| Sbjct 281 CATCCAGAAGGAGTCTACCCTGCATTTGGTG 311 >seq363 Length=34683 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| | |||||||| || | |||| ||| ||||| ||||| || Sbjct 5426 GACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAG 5367 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||||||| ||||||||||||||||||||| | || || || || || || Sbjct 5366 GACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTCCACCTGGTCCTG 5307 Query 40903 CGCTTGAGGGGCGG 40916 ||| || | || || Sbjct 5306 CGCCTGCGTGGTGG 5293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515210563638160