Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20capitalensis_20[genbank_20GCA_5F001604925.1_202016-
03-31] 1,341 sequences; 32,454,403 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq496 196 5e-45
seq731 149 6e-31
seq670 141 1e-28
seq923 107 2e-18
seq363 107 2e-18
>seq496
Length=30664
Score = 196 bits (216), Expect = 5e-45
Identities = 217/286 (76%), Gaps = 5/286 (2%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| ||||||||||||| |||||| | || |||
Sbjct 4937 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCTGAGGAGATTGATCTG 4996
Query 116696 TCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
||||||||| |||||| | ||| |||| || ||||||| ||||||
Sbjct 4997 TCCAAGGACCTTCATGACTGGAACAAGCGTCTGAATGATGACGAGCGTTTCTTCATCTCT 5056
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||||| || ||||| ||||| || |||||||| ||||||||||| ||||||||||
Sbjct 5057 CACGTCCTTGCCTTCTTCGCTGCATCGGACGGCATTGTCAACGAGAACTTGGTCGAGCGC 5116
Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| |||| ||||| ||| | ||||||| || |||||||||||||| ||||| ||
Sbjct 5117 TTCAGCTC-CGAGGTTCAGATCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATTATGAT 5175
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
||||||| | ||||| || | || ||| | | ||||||||||||
Sbjct 5176 GGAGAACATTCACTCCGAGACTTACTCGCTCTTGATCGACACGTAC 5221
Score = 156 bits (172), Expect = 4e-33
Identities = 315/457 (69%), Gaps = 14/457 (3%)
Strand=Plus/Plus
Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-C 117027
|| ||| |||| | |||||||| ||||| || ||||||||| | || ||| || |
Sbjct 5320 CCCTGCATCAAGAAAAAGGCCGACTGGGCCCTCCGCTGGATCTGTGACA-AGAACTCGAC 5378
Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087
||| | || ||| | ||||| || || |||||||| ||||||| || ||
Sbjct 5379 CTTTGCATCCCGTCTGATTGCCTTTGCTGCTGTCGAGGGTATCTTCTTCAGCGGTTCCTT 5438
Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGA 117147
||| |||| || ||||||||||| || ||||| ||||| ||||| || ||| ||||||
Sbjct 5439 CGCGTCCATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGCCTTACCTTCTCCAACGA 5498
Query 117148 GCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTT 117207
|||||||||| | |||||||| |||| |||||||||||| |||| ||| || |
Sbjct 5499 GCTCATCTCCCGTGACGAGGGCATGCACACCGACTTTGCCTGCCTGCTCTTCTCTCACAT 5558
Query 117208 GGTGCAGCGACCGAG-CGCGGCGCGCGTCAG-GGA---GATCGTCACCGACGCGGTCGCC 117262
|| | || || | || || | | | ||| |||| ||||||| || ||||
Sbjct 5559 ----CA-AGTCCAAGCCTTCGCCCGAGACTGTGGAGAGGATCATCACCGAGGCCGTCGAG 5613
Query 117263 ATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAA 117322
|| ||||| ||||| ||||| || || || || ||||| || | || || |
Sbjct 5614 ATGGAGCAAGAGTTCCTTACCGACGCTCTTCCCGTCGCCCTGCTCGGCATGAA-CGCTAC 5672
Query 117323 AC-GATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGC 117381
| |||| || ||||||||||| || |||||| | |||||| | | || | | |
Sbjct 5673 CCTCATGTGCCAGTACATCGAGTTTGTTGCCGACCGCCTGCTGGTGGCTCTTGGCAACAA 5732
Query 117382 CAAGCACTACAACACGCCCAACCCGCTGGACTTTATG 117418
||| ||||||| || ||||||| | ||||| |||
Sbjct 5733 GAAGTTCTACAACTCGACCAACCCCTTCGACTTCATG 5769
>seq731
Length=88763
Score = 149 bits (164), Expect = 6e-31
Identities = 156/205 (76%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771
|||| ||||| ||||||||| | || ||||| || |||||| | | | | | |||
Sbjct 88165 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAATGTGAAGT 88224
Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831
|| |||| ||||| |||||||| ||| |||||||||| || || |||| ||| ||||
Sbjct 88225 CCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTTATCTTCGCTGGCA 88284
Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891
| ||||| || |||| ||||||||| |||||||||||||||||||||| | ||||| |
Sbjct 88285 AGCAGCTTGAGGACGGTCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACGCTCC 88344
Query 40892 ATCTAGTGTTGCGCTTGAGGGGCGG 40916
| || || | ||| || | |||||
Sbjct 88345 ACCTCGTCCTCCGCCTGCGTGGCGG 88369
Score = 145 bits (160), Expect = 8e-30
Identities = 150/194 (77%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770
|||| ||||| ||||||||| |||| ||||| | | |||| | | | |||| |||||
Sbjct 88449 TCACCGGCAAGACCATCACCCTCGAAGTCGAGTCTTCGGACACCATCGACAACG-TCAAG 88507
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
|| || | ||||| ||||||||||| |||||||||| || ||||||| ||| |||
Sbjct 88508 TCGAAGATCCAAGACAAGGAGGGCATCCCTCCGGACCAGCAGCGCCTCATCTTCGCTGGC 88567
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
|| ||||| || |||| |||||||| |||||||||||||||||||||| |||| ||
Sbjct 88568 AAGCAGCTTGAGGACGGTCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCCACTCTC 88627
Query 40891 CATCTAGTGTTGCG 40904
|| || || ||||
Sbjct 88628 CACCTCGTCCTGCG 88641
>seq670
Length=49272
Score = 141 bits (156), Expect = 1e-28
Identities = 140/181 (77%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || |||||||| ||||||||| |||| ||||| || | |||| | |
Sbjct 38588 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 38529
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||| ||| |||||||||| || ||
Sbjct 38528 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 38469
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| ||||| || |||| ||||||||| |||||||||||||||||||
Sbjct 38468 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 38409
Query 40879 G 40879
|
Sbjct 38408 G 38408
>seq923
Length=2568
Score = 107 bits (118), Expect = 2e-18
Identities = 152/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || || || || ||||| |||| |||||| | |
Sbjct 102 ATGCAGATCTTCGTCAAGACCCTGACCGGAAAGACGATCACGCTCGAGGTCGAATCTTCG 161
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | || |||| ||||| || |||| ||||| ||||||||||| | |||||
Sbjct 162 GATACGATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCA 220
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||| ||||| ||||| || || | | || | ||||||||
Sbjct 221 GCAGCGCTTGATCTTCGCAGGCAAGCAGCTCGAGGATGGCAGGACGTTGTCGGACTACAA 280
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
||||||||||||| | || |||||| | |||
Sbjct 281 CATCCAGAAGGAGTCTACCCTGCATTTGGTG 311
>seq363
Length=34683
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| |||||||| ||| | |||||||| || | |||| ||| ||||| ||||| ||
Sbjct 5426 GACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAG 5367
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|||| ||||||||| ||||||||||||||||||||| | || || || || || ||
Sbjct 5366 GACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTCCACCTGGTCCTG 5307
Query 40903 CGCTTGAGGGGCGG 40916
||| || | || ||
Sbjct 5306 CGCCTGCGTGGTGG 5293
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515210563638160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |