Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20capitalensis_20[genbank_20GCA_5F001604925.1_202016- 03-31] 1,341 sequences; 32,454,403 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq546 329 3e-85 seq496 150 2e-31 seq923 95.1 1e-14 seq731 86.0 6e-12 seq670 86.0 6e-12 >seq546 Length=57559 Score = 329 bits (364), Expect = 3e-85 Identities = 651/959 (68%), Gaps = 6/959 (1%) Strand=Plus/Plus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 |||| ||||| | |||||| || || ||||| || | ||||||||| ||||| ||| Sbjct 43238 GCGAGAGAGGCCAAATTGCAAACAGCAACCTCATCAGGAGCCGTGTACTCAACAATCTCG 43297 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 || || ||| | || ||||| | || |||||||||| || || ||||| Sbjct 43298 CAGCAGAGGTTGGAGCTGCGAATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAA 43357 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 | ||||||||||||||| | || |||| |||||| ||| | ||||| ||| || | Sbjct 43358 GCATCCTTGTAGAGCATAAAGGGATTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCATAC 43417 Query 23201 CACATAGTCTGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTA 23259 |||| | || ||| | || ||| | || | | |||||| |||||| | | ||| Sbjct 43418 CACAGCTTTTGGGCGCGGACT-GTCTCGCGACCACGGCCTTCCCTTTCGTACCTCTCGTA 43476 Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACAT 23319 | | | || || ||| | ||||| |||||| || || || | | || || | Sbjct 43477 GAGCTCCTCGAACTCGTCGCCGTACACGTCGGCAAGACCCGGGGCCTCGTGAGGGCAAAA 43536 Query 23320 GAGACTCCACATTGAGTCATTT--TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGA 23377 |||| |||| || | ||| || || || |||| || ||||| || ||||| | Sbjct 43537 GAGAGTCCA--TTCACCGTTTTGCTCCACACGCTTCATGAACAGATCGGGAATCCACAAC 43594 Query 23378 GCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAA 23437 ||||| || || ||||| ||||| |||||||| || ||| |||||| | || | Sbjct 43595 GCGTAAAAGAGGTCGCGCGCGCGGACCTCCTCCTTTCCGTGGTTCTTGCGAAGGTCGAGG 43654 Query 23438 AAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTA 23497 ||| || ||||| || ||||| ||||| ||||| | |||||| || || || | ||| Sbjct 43655 AAGGGGAAGACGTCAGCGTGCCAAGGCTCCAGGTAGATGGCAAAAGCACCAGGACGCTTG 43714 Query 23498 TTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGA 23557 ||||| || || |||||||| || || ||||||||||| |||| ||||| || | || Sbjct 43715 TTGCCACCTTGGTCGACGTAGCGAGCAGTGTTGTTGTAGACTCGGAGCATGGGAATCAGG 43774 Query 23558 CCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACG 23617 |||||||| | ||| ||| || | || ||| | | |||| ||| ||| Sbjct 43775 CCGTTGGAGGTACCGTTGGTGCCAGCAATGTAGGAGCCTGTGGAACGAATACGGTGGACG 43834 Query 23618 TGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAG 23677 | || ||| || || ||| ||| || || ||||| || || || ||||||||||| Sbjct 43835 TTGAGACCAATTCCACCGGCCGTCTTGGAAATCATAGCACAAGTCTTGAGAGTGTCGTAA 43894 Query 23678 ATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTG 23737 || ||||||||||||||||| || | ||| |||||| || || | | || | ||| Sbjct 43895 ATACCCTCGATGCTGTCCTCCTTCATGTCGATCAAGAAGCATGATGCAAGCTGGGGCTTG 43954 Query 23738 GGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGA 23797 || ||| | || ||||| || ||| ||| || |||||| | | |||||| | Sbjct 43955 GGGGTACCAGCGTTGAACAAGGTGGGGGAGGCATGAGTAAAGCACTTTTCCGACATCAAC 44014 Query 23798 TTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATC 23857 |||||||| |||| ||| ||||| || ||||| ||||||| || || ||||| Sbjct 44015 TTGTACGTTTCGAGGGCACTCGTTATGTCTTCGCCGTGGATACCGACAGCAACACGCATG 44074 Query 23858 ATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGC 23917 ||||||| || ||||| ||| | ||| || || | || ||||| | | | Sbjct 44075 ATCATGTGCTGCGGTCTTTCGGCAACTTTGCCATTGATGCGAAGCAAGTATGACCTCTCC 44134 Query 23918 ATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 | || || || |||||||| | ||||| |||||||| |||| || ||||| || || Sbjct 44135 AGTGTCTTGAAACCAAAATATTGGTAGTTGAAGTCACGGTCGTAGACGATGGCGGAGTT 44193 >seq496 Length=30664 Score = 150 bits (166), Expect = 2e-31 Identities = 316/462 (68%), Gaps = 18/462 (4%) Strand=Plus/Plus Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || || || || || || ||||| ||||| ||||| || ||| ||| | || || Sbjct 5392 CTGATTGCCTTTGCTGCTGTCGAGGGTATCTTCTTCAGCGGTTCCTTCGCGTCCATCTTC 5451 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||| || ||||||||||| ||||| || || ||||||| | || || || Sbjct 5452 TGGCTCAAGAAGCGTGGCCTGATGCCTGGCCTTACCTTCTCCAACGAGCTCATCTCCCGT 5511 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACAT--TGTCAATAAAC 58152 |||||||| | || || || ||||| ||||| | | ||||||||| ||| || | Sbjct 5512 GACGAGGGCATGCACACCGACTTTGCCTGCCTGCTCTTCTCTCACATCAAGTC--CAAGC 5569 Query 58153 CGACGCGGGATCGCATCTTG-GA-CATTATCACCGAGGCGGTCGCGATCGAAAATGAGTT 58210 | ||| || | | | | || || ||||||||||| |||| ||| || | ||||| Sbjct 5570 CTTCGCCCGA--GACTGTGGAGAGGATCATCACCGAGGCCGTCGAGATGGAGCAAGAGTT 5627 Query 58211 TGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTA 58270 | ||||| || || || || ||| ||||||| |||||| | | |||| |||| Sbjct 5628 CCTTACCGACGCTCTTCCCGTCGCCCTGCTCGGCATGAACGCTACCCTCATGTGCCAGTA 5687 Query 58271 CATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGG-----AGAGCGTCATTAC 58325 ||| ||||||||||||||| | || || | | || |||| ||| || ||| Sbjct 5688 CATCGAGTTTGTTGCCGACCGCCTGCTGGTGG--CT-CTTGGCAACAAGAAGTTC--TAC 5742 Query 58326 AACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTT 58385 ||| ||| || || || || || ||| | || |||||| | |||||||| ||||| Sbjct 5743 AACTCGACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAACGGCAAGACCAACTTC 5802 Query 58386 TTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATG 58427 ||||| || ||| | || || ||||| ||| || ||| Sbjct 5803 TTCGAGAAGCGTGTTGGTGACTACCAAAAGGCCGGTGTCATG 5844 >seq923 Length=2568 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| || || |||||||| |||| || ||| | || Sbjct 102 ATGCAGATCTTCGTCAAGACCCTGACCGGAAAGACGATCACGCTCGAGGTCGAATCTTCG 161 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| || || ||||||||| ||| | ||||| |||||| Sbjct 162 GATACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 221 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| ||||| ||| | || || | ||| || || || ||| Sbjct 222 CAGCGCTTGATCTTCGCAGGCAAGCAGCTCGAGGATGGCAGGACGTTGTCGGACTACAAC 281 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || || || ||| |||| || Sbjct 282 ATCCAGAAGGAGTCTACCCTGCATTTGGTGCT 313 >seq731 Length=88763 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276 || ||||| || |||||| | || || || | ||||||| |||| | || || Sbjct 88167 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAATGTGAAGTCC 88226 Query 31277 AGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAA 31336 | || ||||||||| ||| | || || |||||||||||||| || ||||||||||| Sbjct 88227 AAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTTATCTTCGCTGGCAAG 88286 Query 31337 CAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCAT 31396 ||| | || ||| | || | ||| || ||||| || || || ||||| || || Sbjct 88287 CAGCTTGAGGACGGTCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACGCTCCAC 88346 Query 31397 CTGGTACTTAGACTGAGGGGCGGTA 31421 || || || | ||| | ||||||| Sbjct 88347 CTCGTCCTCCGCCTGCGTGGCGGTA 88371 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276 || ||||| || |||||| |||| || || | || |||| |||| | ||||| | Sbjct 88451 ACCGGCAAGACCATCACCCTCGAAGTCGAGTCTTCGGACACCATCGACAACGTCAAGTCG 88510 Query 31277 AGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAA 31336 | || |||||||| ||| | || || ||||||||||| || || ||||||||||| Sbjct 88511 AAGATCCAAGACAAGGAGGGCATCCCTCCGGACCAGCAGCGCCTCATCTTCGCTGGCAAG 88570 Query 31337 CAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCAT 31396 ||| | || ||| | || | ||| || ||||| || || || || ||||| || Sbjct 88571 CAGCTTGAGGACGGTCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCCACTCTCCAC 88630 Query 31397 CTGGTACTTAGACTGAGGGGCGGTA 31421 || || || | ||| | || |||| Sbjct 88631 CTCGTCCTGCGTCTGCGTGGTGGTA 88655 >seq670 Length=49272 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| ||||| ||||| ||||| || |||||| |||| || || | || |||| || Sbjct 38588 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 38529 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 || | ||||| | || ||||||||| ||| | || || ||||||||||| || Sbjct 38528 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 38469 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGAC 31348 || ||||| ||||| ||| | || ||| Sbjct 38468 ATCTTCGCCGGCAAGCAGCTCGAGGAC 38442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445758927840720