Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20capitalensis_20[genbank_20GCA_5F001604925.1_202016- 03-31] 1,341 sequences; 32,454,403 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq546 159 4e-34 seq496 98.7 1e-15 >seq546 Length=57559 Score = 159 bits (176), Expect = 4e-34 Identities = 436/664 (66%), Gaps = 8/664 (1%) Strand=Plus/Plus Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307 ||| || |||| | || ||| || ||||| || ||||| |||||||| | || ||| Sbjct 43543 CCATTCACCGTTTTGCTCCACACGCTTCATGAACAGATCGGGAATCCACAACGCGTAAAA 43602 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 || || | | | ||||| ||||| ||||| ||| |||||||| | | Sbjct 43603 GAGGTCGCGCGCGCGGACCTCCTCCTTTCCGTGGTTCTTGCGAAGGTCGAGGAAGGGGAA 43662 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 | |||| ||||| || |||| ||| ||||| | | | ||||| || ||||| || || Sbjct 43663 GACGTCAGCGTGCCAAGGCTCCAGGTAGATGGCAAAAGCACCAGGACGCTTGTTGCCACC 43722 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 || || | ||| | ||| ||||| || || |||| | ||| ||||| | ||||| || Sbjct 43723 TTGGTCGACGTAGCGAGCAGTGTTGTTGTAGACTCGGAGCATGGGAATCAGGCCGTTGGA 43782 Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAA--TTGATAGA 63545 |||| ||||| || | || ||| || ||| ||||||| | |||| || Sbjct 43783 GGTACCGTTGGTGCCAGCAATGTAGGAGCCTGTGGAACGAATACGGTGGACGTTGA--GA 43840 Query 63546 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCT 63605 || ||||| || ||| | || || || | || || || | ||||| || || || Sbjct 43841 CCAATTCCACCGGCCGTCTTGGAAATCATAGCACAAGTCTTGAGAGTGTCGTAAATACCC 43900 Query 63606 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTT 63665 || ||||| || || |||||| | | || || | | ||| | | || Sbjct 43901 TCGATGCTGTCCTCCTTCATGTCGATCAAGAAGCATGATGCAAGCTGGGGCTTGGGGGTA 43960 Query 63666 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63725 || || || || ||||| || || || || ||||| || ||||| || | | |||||| Sbjct 43961 CCAGCGTTGAACAAGGTGGGGGAGGCATGAGTAAAGCACTTTTCCGACATCAACTTGTAC 44020 Query 63726 GTCTCAATAGCTGAGTCTATATCCCATTGA--TGAATTCCTACTGCGACACGCATTAACA 63783 || || | || | || ||| | | | || || || || || |||||||| | || Sbjct 44021 GTTTCGAGGGC--ACTCGTTATGTCTTCGCCGTGGATACCGACAGCAACACGCATGATCA 44078 Query 63784 TGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63843 ||||||| |||||||| ||| |||| || || | |||||| || | |||| | Sbjct 44079 TGTGCTGCGGTCTTTCGGCAACTTTGCCATTGATGCGAAGCAAGTATGACCTCTCCAGTG 44138 Query 63844 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCT 63903 | || ||||||||||| | ||| ||||| || ||||| | || | || ||||||| Sbjct 44139 TCTTGAAACCAAAATATTGGTAGTTGAAGTCACGGTCGTAGACGATGGCGGAGTTGAGCT 44198 Query 63904 TATC 63907 ||| Sbjct 44199 CATC 44202 >seq496 Length=30664 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||| ||||| |||||||| | || | ||||| || || || || Sbjct 5540 CAGGCAAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGG 5481 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| ||||||||||| || ||||| || ||||| ||||| || ||| |||||| Sbjct 5480 CCAGGCATCAGGCCACGCTTCTTGAGCCAGAAGATGGACGCGAAGGAACCGCTGAAGAAG 5421 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAG 33730 || || || || |||||||||||||| || Sbjct 5420 ATACCCTCGACAGCAGCAAAGGCAATCAG 5392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629807042682480