Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20capitalensis_20[genbank_20GCA_5F001604925.1_202016- 03-31] 1,341 sequences; 32,454,403 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq546 158 2e-33 seq496 95.1 2e-14 >seq546 Length=57559 Score = 158 bits (174), Expect = 2e-33 Identities = 471/723 (65%), Gaps = 8/723 (1%) Strand=Plus/Plus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 ||||||||||| || | || ||| | | || || |||| ||| || | | | | Sbjct 43484 TCGAACTCGTCGCCGTACACGTCGGCAAGACCCGGGGCCTCGTGAGGGCAAAAGAGAGTC 43543 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 79980 || || || | | || || || ||||| || ||||| |||||||| | || ||| Sbjct 43544 CATTCACCGTTTTGCTCCACACGCTTCATGAACAGATCGGGAATCCACAACGCGTAAAAG 43603 Query 79981 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 80040 || || | | | |||||| ||||| ||||| ||| |||||||| | | Sbjct 43604 AGGTCGCGCGCGCGGACCTCCTCCTTTCCGTGGTTCTTGCGAAGGTCGAGGAAGGGGAAG 43663 Query 80041 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCC 80100 | |||| ||||| || |||| ||| ||||| | | | || || || ||||| || || Sbjct 43664 ACGTCAGCGTGCCAAGGCTCCAGGTAGATGGCAAAAGCACCAGGACGCTTGTTGCCACCT 43723 Query 80101 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 80160 || || | ||| | ||| ||||| || || |||| | ||| ||||| | || ||||| Sbjct 43724 TGGTCGACGTAGCGAGCAGTGTTGTTGTAGACTCGGAGCATGGGAATCAGGCCGTTGGAG 43783 Query 80161 GTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--TTACTAATTGATAGAC 80218 ||||| ||||| || | || ||| || ||| ||||||| | ||| |||| Sbjct 43784 GTACCGTTGGTGCCAGCAATGTAGGAGCCTGTGGAACGAATACGGTGGACGTTG--AGAC 43841 Query 80219 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 80278 | ||||| || ||| | || || || | || || || | || || || || |||| Sbjct 43842 CAATTCCACCGGCCGTCTTGGAAATCATAGCACAAGTCTTGAGAGTGTCGTAAATACCCT 43901 Query 80279 CTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 80338 | ||||| || || |||||| | | || || | | ||| | || | Sbjct 43902 CGATGCTGTCCTCCTTCATGTCGATCAAGAAGCATGATGCAAGCTGGGGCTTGGGGGTAC 43961 Query 80339 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 80398 | || || || ||||| || || || || ||||| || ||||| |||| | ||||||| Sbjct 43962 CAGCGTTGAACAAGGTGGGGGAGGCATGAGTAAAGCACTTTTCCGACATCAACTTGTACG 44021 Query 80399 TCTCAATAGCTGATTCTATATCCCATTG--ATGAATTCCTACCGCGACACGCATTAACAT 80456 | || | || | || ||| | | | || || || || || |||||||| | ||| Sbjct 44022 TTTCGAGGGC--ACTCGTTATGTCTTCGCCGTGGATACCGACAGCAACACGCATGATCAT 44079 Query 80457 GTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGT 80516 |||||| |||||||| | | ||| ||| || | |||||| || | |||| || Sbjct 44080 GTGCTGCGGTCTTTCGGCAACTTTGCCATTGATGCGAAGCAAGTATGACCTCTCCAGTGT 44139 Query 80517 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 80576 || ||||||||||| | ||| ||||| || ||||| | || | |||||||| | Sbjct 44140 CTTGAAACCAAAATATTGGTAGTTGAAGTCACGGTCGTAGACGATGGCGGAGTTGAGCTC 44199 Query 80577 ATC 80579 ||| Sbjct 44200 ATC 44202 >seq496 Length=30664 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||||| |||||||| | || || |||||||| || || || Sbjct 5540 CAGGCAAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGG 5481 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| ||||||||||| || ||||| || |||||||| || || || |||||| Sbjct 5480 CCAGGCATCAGGCCACGCTTCTTGAGCCAGAAGATGGACGCGAAGGAACCGCTGAAGAAG 5421 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAA 50104 || || || || || |||||||||| Sbjct 5420 ATACCCTCGACAGCAGCAAAGGCAA 5396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718256760019240