Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20capitalensis_20[genbank_20GCA_5F001604925.1_202016- 03-31] 1,341 sequences; 32,454,403 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq496 111 2e-19 >seq496 Length=30664 Score = 111 bits (122), Expect = 2e-19 Identities = 250/371 (67%), Gaps = 11/371 (3%) Strand=Plus/Plus Query 50494 GGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCAC 50553 ||| | ||||| ||||| || || ||||||| | || || || ||||| || |||||| Sbjct 5467 GGCCTGATGCCTGGCCTTACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCAC 5526 Query 50554 ACAGACTTTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAAATTATCATACGAAACA 50613 || |||||||| || || || | | | | | || || || ||| || Sbjct 5527 ACCGACTTTGCCTGCCTGCTCTTCTCT---CACATCAAGTCCAAGCCTTCGCCCGAGAC- 5582 Query 50614 ATTTTGGACATGTTCAAA---GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCT 50670 | |||| | | ||| || |||||||| || || ||||||| | || |||||| Sbjct 5583 --TGTGGAGAGGATCATCACCGAGGCCGTCGAGATGGAGCAAGAGTTCCTTACCGACGCT 5640 Query 50671 TTACCCGTGGCATTGTTGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTT 50730 | ||||| || || | ||||||||||| | | |||||| ||||||| ||||||||| Sbjct 5641 CTTCCCGTCGCCCTGCTCGGCATGAACGCTACCCTCATGTGCCAGTACATCGAGTTTGTT 5700 Query 50731 GCAGACAGATTGTTGTTGCAGCTGGGACAAC-CGAAATACTATAATGCACGTAACCCCTT 50789 || ||| | || || || || || |||| ||| | ||| || | |||||||| Sbjct 5701 GCCGACCGCCTGCTGGTGGCTCTTGG-CAACAAGAAGTTCTACAACTCGACCAACCCCTT 5759 Query 50790 TCCGTTTATGAATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGG 50849 || ||| | ||||| ||| | | ||||| || ||||| ||||| | ||||| || Sbjct 5760 CGACTTCATGGAGAACATTTCGCTCAACGGCAAGACCAACTTCTTCGAGAAGCGTGTTGG 5819 Query 50850 CGAATACAAAA 50860 || ||| ||| Sbjct 5820 TGACTACCAAA 5830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507005901171120