Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20capitalensis_20[genbank_20GCA_5F001604925.1_202016- 03-31] 1,341 sequences; 32,454,403 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq496 176 7e-39 seq546 143 4e-29 >seq496 Length=30664 Score = 176 bits (194), Expect = 7e-39 Identities = 585/899 (65%), Gaps = 86/899 (10%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| ||||||| || ||||| | || ||| | |||||| Sbjct 4937 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCTGAGGAGATTGATCTG 4996 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTT----AT 125134 ||||||||||| | || ||| | | ||| ||| ||| ||| |||| |||| || Sbjct 4997 TCCAAGGACCTTCATGACTGGAACAAGCGTCTGAATGA---TGA-CGAGCGTTTCTTCAT 5052 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 || ||| | | |||||||| || | || || || || |||||||| || || | Sbjct 5053 CTCTCACGTCCTTGCCTTCTTCGCTGCATCGGACGGCATTGTCAACGAGAACTTGGTCGA 5112 Query 125195 ACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATC 125252 || ||| ||| ||| | || || |||| ||| ||||| ||||| ||||| || Sbjct 5113 GCGCTTCAGCTC-CGAGGTTCAGATCCCCGAGG-CTCGCTGCTTCTACGGCTTCCAGATT 5170 Query 125253 ATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGAT 125312 ||||| |||||| | ||||| || | ||||| |||| |||| ||||||| |||| Sbjct 5171 ATGATGGAGAACATTCACTCCGAGACTTACTCGCTCTTGATCGACACGTACATTAGCGAG 5230 Query 125313 CC---GCAACGTAAACACATGCTCTTTAACGCAATCGAC-ACGGTGC-----------CG 125357 || |||||| || || ||||| ||||| || ||| || || | | Sbjct 5231 CCCAAGCAACGCAACTAC---CTCTTCAACGCCATTGACAACAGTACGTGGTCACATGCA 5287 Query 125358 TCT----------ATA------CGT-------------------AAAAAGGCTCAATGGG 125382 ||| ||| ||| |||||||| | |||| Sbjct 5288 TCTTGTAGTCAACATACTGACGCGTCCTAGTTCCCTGCATCAAGAAAAAGGCCGACTGGG 5347 Query 125383 TGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCG 125442 | || |||||| |||| | || || | | || | | ||| | || || || | Sbjct 5348 CCCTCCGCTGGATCTGTGACAAGAACTCGACCTTTGCATCCCGTCTGATTGCCTTTGCTG 5407 Query 125443 CCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCG 125502 | || ||||| |||||||| ||| || ||| ||||||| |||||||||||||| | Sbjct 5408 CTGTCGAGGGTATCTTCTTCAGCGGTTCCTTCGCGTCCATCTTCTGGCTCAAGAAGCGTG 5467 Query 125503 GACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACT 125562 | || ||||| || || || | |||||| | || || || ||||||||| | ||| Sbjct 5468 GCCTGATGCCTGGCCTTACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCACA 5527 Query 125563 GTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTCC-CGAGTGCAGATCCAG-CG 125619 ||||||||| || || || || || ||| |||| | | | | | || | Sbjct 5528 CCGACTTTGCCTGCCTGCTCTTCTCTCA--CATC-AAGTCCAAGCCTTC-GCCCGAGACT 5583 Query 125620 ATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCG 125679 || | ||| |||| | ||||| ||||| ||| || |||||||| || |||| Sbjct 5584 GTGGAGAGG--ATCA------TCACCGAGGCCGTCGAGATGGAGCAAGAGTTCCTTACCG 5635 Query 125680 AATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGT 125739 | | || || ||| | || | ||||||||| | || |||||| ||||||| |||| Sbjct 5636 ACGCTCTTCCCGTCGCCCTGCTCGGCATGAACGCTACCCTCATGTGCCAGTACATCGAGT 5695 Query 125740 TTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGA---TTTACAACGCCAAGA 125796 |||| || || || || ||| | | ||||| ||||| | |||||| | | | Sbjct 5696 TTGTTGCCGACCGCCTGCTG---GTGGCTCTTGGCAACAAGAAGTTCTACAACTCGACCA 5752 Query 125797 ATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 | ||||| || |||||| | ||| || || | || ||||||||||| ||||||||| Sbjct 5753 ACCCCTTCGACTTCATGGAGAACATTTCGCTCAACGGCAAGACCAACTTCTTCGAGAAG 5811 >seq546 Length=57559 Score = 143 bits (158), Expect = 4e-29 Identities = 385/581 (66%), Gaps = 12/581 (2%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||| | | ||| ||||| | || |||||| || | ||||| || || | || Sbjct 43794 ACCAACGGTACCTCCAACGGCCTGATTCCCATGCTCCGAGTCTACAACAACACTG-CTCG 43736 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 ||||| || || ||||| || || || || ||| | ||| ||||| |||| ||||| Sbjct 43735 CTACGTCGACCAAGGTGGCAACAAGCGTCCTGGTGCTTTTGCCATCTACCTGGAGCCTTG 43676 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| ||||| || ||| |||| | ||||| ||| || || |||| || Sbjct 43675 GCACGCTGACGTCTTCCCCTTCCTCGACCTTCGCAAGAACCACGGAAAGGAGGAGGTCCG 43616 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT----CA 97041 || | ||| | ||||| || | ||| | || ||| ||||||||||||| || || Sbjct 43615 CGCGCGCGACCTCTTTTACGCGTTGTGGATTCCCGATCTGTTCATGAAGCGTGTGGAGCA 43556 Query 97042 ACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCT 97101 | |||||| | |||| || | ||||| || | | || ||||| |||| | Sbjct 43555 A-AACGGTG---AATGGACTCTCTTTTGCCCTCACGAGGCCCCGGGTCTTGCCGACGTGT 43500 Query 97102 GGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGA 97160 ||||| ||||| |||| ||| | ||||| || ||||| || |||| Sbjct 43499 ACGGCGACGAGTTCGAGGAGCTCTACGAGAGGTACGAAAGGGAAGGCCGTGGTCGCGAGA 43440 Query 97161 CGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220 | |||| || | | | |||||| | |||||| | ||||||| ||||| || | | Sbjct 43439 C-AGTCCGCGCCCAAAAGCTGTGGTATGCCATCCTCGAGGCTCAGACCGAGACCGGCAAT 43381 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 || | || |||||||||||| | || ||||| |||||||| || | |||||| Sbjct 43380 CCCTTTATGCTCTACAAGGATGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGCACC 43321 Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCA 97340 || ||||||| || ||| || ||||| |||||| | |||| || ||| || Sbjct 43320 ATTCGCAGCTCCAACCTCTGCTGCGAGATTGTTGAGTACACGGCTCCTGATGAGGTTGCT 43261 Query 97341 GTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 |||||| | |||| || || ||| || | ||||| || Sbjct 43260 GTTTGCAATTTGGCCTCTCTCGCTCTTCCTACCTTTGTTGA 43220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741046777995160