Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20capitalensis_20[genbank_20GCA_5F001604925.1_202016- 03-31] 1,341 sequences; 32,454,403 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1054 105 1e-18 seq1100 96.9 5e-16 >seq1054 Length=15539 Score = 105 bits (116), Expect = 1e-18 Identities = 86/102 (84%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||||| | || || |||||||| || ||||||||||| || | Sbjct 13411 CGCCAAGCGTCACCGCAAGATCT-TGCGCGACAACATCCAGGGTATCACCAAGCCTGCCA 13469 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||||||||| ||||| ||||| || ||||||||| |||||| Sbjct 13470 TCCGTCGTCTCGCTCGCCGTGGCGGTGTCAAGCGTATCTCTG 13511 Score = 89.7 bits (98), Expect = 8e-14 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| || | ||| | ||| |||||| ||| ||| |||| ||| | Sbjct 13564 TGATCTACGAAGAGACCCGCGGTGTCCTCAAGTCGTTCCTCGAGAGCGTCATCCGTGACG 13623 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| ||||||||| | || | ||||| | Sbjct 13624 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCCCTCGACGTTGTCTACG 13683 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || || ||||| | | || ||||| ||| ||||| Sbjct 13684 CCCTCAAGCGCCAGGGCCGCACCCTCTACGGTTTCGGAGGTTAA 13727 >seq1100 Length=50903 Score = 96.9 bits (106), Expect = 5e-16 Identities = 73/85 (86%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||||| | || || |||||||| || ||||||||||| || ||||||||||| ||||| Sbjct 48629 AGATCT-TGCGTGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTCGTCTTGCTCGC 48687 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||||||| ||||||||| |||||| Sbjct 48688 CGTGGTGGTGTCAAGCGTATCTCTG 48712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073973914313