Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20capitalensis_20[genbank_20GCA_5F001604925.1_202016- 03-31] 1,341 sequences; 32,454,403 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq496 102 2e-16 seq506 100 6e-16 >seq496 Length=30664 Score = 102 bits (112), Expect = 2e-16 Identities = 269/404 (67%), Gaps = 10/404 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || || || ||||||||||||||||||||| || Sbjct 5807 TCGAAGAAGTTGGTCTTGCCGTTGAGCGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTC 5748 Query 251623 GCATTGT---ACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCC 251679 | |||| ||| |||| | |||||| || || | | |||||| || |||||||| Sbjct 5747 GAGTTGTAGAACTTCTTG---TTGCCAAGAGCCACCAGCAGGCGGTCGGCAACAAACTCG 5691 Query 251680 AGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCA-TACGACAAGGAATTGCCTCACA 251738 | ||||| | ||| || || ||||||||| | || |||| |||| || || Sbjct 5690 ATGTACTGGCACATGAGGGTAGCGTTCATGCCGAGCAGGGCGAC-GGGAAGAGCGTCGGT 5632 Query 251739 GATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGA 251798 | ||| || | || | | || ||||| | || || ||| | | || Sbjct 5631 AAGGAACTCTTGCTCCATCTCGACGGCCTCGGTGATGATCCTCTCCACAGTCTCGGGCGA 5572 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 ||||| || | | ||| | || || | |||| | ||||| |||||||| Sbjct 5571 AGGCTTGGACTTGATGTGAGAGAAGAGCAGGCAGGCAAAGTCGGTGTGCATGCCCTCGTC 5512 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 || ||||| ||||||||| | ||||||||||||| ||||| ||| ||||||| Sbjct 5511 ACGGGAGATGAGCTCGTTGGAGAAGGTAAGGCCAGGCATCAGGCCACGCTTCTTGAGCCA 5452 Query 251919 GAAGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGACA 251961 |||||| | ||| ||||| || ||| | | |||||||||| Sbjct 5451 GAAGATGGACGC-GAAGGAACCGCTGAAGAAGATACCCTCGACA 5409 >seq506 Length=84062 Score = 100 bits (110), Expect = 6e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || || | |||||||| ||||| ||||| || ||||| ||||| |||| ||||| Sbjct 38126 CTCCCGTATCGCCGTCATTGGTCCCAACGGTGCCGGAAAGTCCACCCTGGTCAATGTCCT 38185 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 |||||| ||| | |||| | || || | |||| ||||| || || || Sbjct 38186 GACTGGTGAGCTCATTCCCACCGCCGGTGAGGTCTACCAGCACGAGAACATCCGTATCGC 38245 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||||||| |||||| || ||||||| |||| |||||| | Sbjct 38246 CTACATCAAGCAGCACGCTTTCGCCCACATTGACCACCACCTCGACAAGACTCCCTCGGA 38305 Query 280340 ATACATTCAGTGGCG 280354 |||||||||||||| Sbjct 38306 GTACATTCAGTGGCG 38320 Score = 91.5 bits (100), Expect = 3e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| || || |||| ||| | || || |||| ||||||||||| ||| Sbjct 37311 GGTGAGGACCTCTGCAACTGCACCTTCAACTTGGCCTACGGTGCCAAGATTCTGCTCAAC 37370 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| | | ||||||||| | || || ||||| ||||| |||| || | Sbjct 37371 CAGACCCATCTCCGCCTGAAGCGTGGCCAGCGCTACGGTCTGCTCGGTGCCAACGGTTCC 37430 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || |||| ||| || ||||||||||| |||| ||| | | ||| ||||| | ||| Sbjct 37431 GGAAAGACCACCCTCATGCGCGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 37489 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 ||||| | ||| || || || ||||||||| | ||||| Sbjct 37490 GAACGAGGTCAAGACTGTCTACGTCGAGCACGACCTTGACTC 37531 Score = 84.2 bits (92), Expect = 4e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762 ||||| ||||| || ||||| ||||| || ||| ||||| | ||| | | || || Sbjct 38715 CACTCGCGCATGCGTGGTCTGTCTGGTGGTCAGCGTGTCAAGGTCGTCCTTGCCGCTTGC 38774 Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 || |||||| | |||||| ||||||| ||||||||||| |||||||| || ||||| || Sbjct 38775 TC-GTGGCAGCGTCCTCACTTGATCGTCCTCGACGAGCCCACCAACTACCTCGACCGTGA 38833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027819140157781