Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20capitalensis_20[genbank_20GCA_5F001604925.1_202016-
03-31] 1,341 sequences; 32,454,403 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq731 127 5e-24
seq923 114 3e-20
seq363 95.1 3e-14
seq670 93.3 1e-13
>seq731
Length=88763
Score = 127 bits (140), Expect = 5e-24
Identities = 142/190 (75%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| |||||||| ||||||||||| |||| ||||||||| | | || | || ||
Sbjct 88354 AGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCC 88295
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || |||||||| ||||||||||||||||| ||| || || |||
Sbjct 88294 TCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 88235
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| |||||| |||| |||||| | | || || || | ||||| |||
Sbjct 88234 TGAATCTTGGACTTCACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTC 88175
Query 199598 TTACCCGTGA 199607
|| || ||||
Sbjct 88174 TTGCCGGTGA 88165
Score = 120 bits (132), Expect = 7e-22
Identities = 146/199 (73%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | |||||| ||||||||||| |||||||| |||| ||||||||| | | ||
Sbjct 88647 CGCAGACGCAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTG 88588
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || || |||||||| || ||||||||||| ||||||||||||||| || ||
Sbjct 88587 CGACCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCC 88528
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| || || ||||| ||| ||| |||| |||||| | | || || || |
Sbjct 88527 TCCTTGTCTTGGATCTTCGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACTTCGAGG 88468
Query 199589 GTGATCGTCTTACCCGTGA 199607
||||| ||||| || ||||
Sbjct 88467 GTGATGGTCTTGCCGGTGA 88449
>seq923
Length=2568
Score = 114 bits (126), Expect = 3e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | || || || |||||||| |||| ||||||||| | ||| |||
Sbjct 322 CGAAGACGGAGCACCAAATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTC 263
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
|| ||||| || |||||||| || |||||||| | ||||||||||| || || ||
Sbjct 262 CTGCCATCCTCGAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCC 203
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||||||||| ||| ||| || | || || | | ||| || || | |
Sbjct 202 TCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTATCCGAAGATTCGACCTCGAGC 143
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||||||||| || || || || || || || || ||
Sbjct 142 GTGATCGTCTTTCCGGTCAGGGTCTTGACGAAGATCTG 105
>seq363
Length=34683
Score = 95.1 bits (104), Expect = 3e-14
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | |||||| |||||||| ||||||||||| |||| ||||||||| | | ||
Sbjct 5299 CGCAGGCGCAGGACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTG 5358
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518
| || || || |||||||| ||||||||||| | ||||||||||| ||
Sbjct 5359 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGG 5408
>seq670
Length=49272
Score = 93.3 bits (102), Expect = 1e-13
Identities = 129/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
|||| |||| ||||||||| | | || | || || || |||||||| ||||||||||
Sbjct 38408 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 38467
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559
| || |||||||||||||| ||| || || ||||| ||||| ||| || |
Sbjct 38468 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 38527
Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619
||| |||||| | | || || || | ||||| ||||| ||||| || || || || |
Sbjct 38528 CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGA 38587
Query 199620 A 199620
|
Sbjct 38588 A 38588
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178901344284847
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |