Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20capitalensis_20[genbank_20GCA_5F001604925.1_202016- 03-31] 1,341 sequences; 32,454,403 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq923 141 1e-28 seq670 134 2e-26 seq363 116 4e-21 seq731 113 5e-20 >seq923 Length=2568 Score = 141 bits (156), Expect = 1e-28 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| ||||| ||| |||||| ||||| |||||||| || | || | | Sbjct 317 ACGGAGCACCAAATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTCCTGCC 258 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || |||||||||||||| ||||| ||||||||||||||||| | ||| | || |||||| Sbjct 257 ATCCTCGAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTT 198 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| |||||| ||||| ||| | | | ||| || ||||| || || | ||||| Sbjct 197 GTCCTGAATCTTCGACTTGA-CGTTGTCAATCGTATCCGAAGATTCGACCTCGAGCGTGA 139 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || || ||||| || || || ||||| ||||| Sbjct 138 TCGTCTTTCCGGTCAGGGTCTTGACGAAGATCTGCAT 102 >seq670 Length=49272 Score = 134 bits (148), Expect = 2e-26 Identities = 139/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| || ||||| |||| |||||||||||||||||||| | Sbjct 38408 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 38467 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||||||||| | || | || |||||||||| |||||| ||||| | Sbjct 38468 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 38527 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||| || || || || | |||||||| ||||||||||| || || || | Sbjct 38528 CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGA 38587 Query 46584 AG 46585 || Sbjct 38588 AG 38589 >seq363 Length=34683 Score = 116 bits (128), Expect = 4e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| || | || |||||| ||||| |||||||| || || ||||| || Sbjct 5305 CGCAGGACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCG 5364 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || |||||||||||||||||||| ||||||||||||||||||| || | || ||||||| Sbjct 5365 TCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTG 5424 Query 46499 TC 46500 || Sbjct 5425 TC 5426 >seq731 Length=88763 Score = 113 bits (124), Expect = 5e-20 Identities = 128/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| || ||||||||||| ||||| Sbjct 88618 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAA 88559 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | || | || ||||||||| ||||||| ||||| ||| Sbjct 88558 GATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGA-CGT 88500 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | | ||||| || || || || | |||||||| ||||| || Sbjct 88499 TGTCGATGGTGTCCGAAGACTCGACTTCGAGGGTGATGGTCTTGCCGGT 88451 Score = 100 bits (110), Expect = 3e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| || ||||||||||| ||||| Sbjct 88334 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAA 88275 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | || |||||||||| ||||| ||| | | Sbjct 88274 GATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTCACATT 88215 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | |||||| || || || || | |||||||| ||||| || Sbjct 88214 GTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 88167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565228925191320