Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20capitalensis_20[genbank_20GCA_5F001604925.1_202016-
03-31] 1,341 sequences; 32,454,403 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq923 141 1e-28
seq670 134 2e-26
seq363 116 4e-21
seq731 113 5e-20
>seq923
Length=2568
Score = 141 bits (156), Expect = 1e-28
Identities = 163/217 (75%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||||| ||||| ||| |||||| ||||| |||||||| || | || | |
Sbjct 317 ACGGAGCACCAAATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTCCTGCC 258
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| |||||||||||||| ||||| ||||||||||||||||| | ||| | || ||||||
Sbjct 257 ATCCTCGAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTT 198
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556
|||| |||||| ||||| ||| | | | ||| || ||||| || || | |||||
Sbjct 197 GTCCTGAATCTTCGACTTGA-CGTTGTCAATCGTATCCGAAGATTCGACCTCGAGCGTGA 139
Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| || || || ||||| || || || ||||| |||||
Sbjct 138 TCGTCTTTCCGGTCAGGGTCTTGACGAAGATCTGCAT 102
>seq670
Length=49272
Score = 134 bits (148), Expect = 2e-26
Identities = 139/182 (76%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| ||||||||||| || ||||| |||| |||||||||||||||||||| |
Sbjct 38408 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 38467
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
||| |||||||||||| | || | || |||||||||| |||||| ||||| |
Sbjct 38468 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 38527
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||||| || || || || | |||||||| ||||||||||| || || || |
Sbjct 38528 CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGA 38587
Query 46584 AG 46585
||
Sbjct 38588 AG 38589
>seq363
Length=34683
Score = 116 bits (128), Expect = 4e-21
Identities = 99/122 (81%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| ||||| || | || |||||| ||||| |||||||| || || ||||| ||
Sbjct 5305 CGCAGGACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCG 5364
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| |||||||||||||||||||| ||||||||||||||||||| || | || |||||||
Sbjct 5365 TCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTG 5424
Query 46499 TC 46500
||
Sbjct 5425 TC 5426
>seq731
Length=88763
Score = 113 bits (124), Expect = 5e-20
Identities = 128/169 (76%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| |||| || ||||||||||| |||||
Sbjct 88618 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAA 88559
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||||||| | || | || ||||||||| ||||||| ||||| |||
Sbjct 88558 GATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGA-CGT 88500
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | | ||||| || || || || | |||||||| ||||| ||
Sbjct 88499 TGTCGATGGTGTCCGAAGACTCGACTTCGAGGGTGATGGTCTTGCCGGT 88451
Score = 100 bits (110), Expect = 3e-16
Identities = 123/168 (73%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| |||| || ||||||||||| |||||
Sbjct 88334 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAA 88275
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||| | || | || |||||||||| ||||| ||| | |
Sbjct 88274 GATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTCACATT 88215
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | |||||| || || || || | |||||||| ||||| ||
Sbjct 88214 GTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 88167
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565228925191320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |