Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20capitalensis_20[genbank_20GCA_5F001604925.1_202016- 03-31] 1,341 sequences; 32,454,403 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq496 212 6e-50 seq670 131 2e-25 seq731 127 2e-24 seq363 104 2e-17 seq923 86.0 6e-12 >seq496 Length=30664 Score = 212 bits (234), Expect = 6e-50 Identities = 589/899 (66%), Gaps = 76/899 (8%) Strand=Plus/Minus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 ||||| || || || || ||||| || || || || || || | | |||||| | Sbjct 5831 TTTTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGTTGAGCGAAATGTTC 5772 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAG---TGCTTGGTGCCGATCAGGTCGACG 132720 ||| || || |||||||||| | ||||||| | |||| |||| | || | || Sbjct 5771 TCCATGAAGTCGAAGGGGTTGGTCGAGTTGTAGAACTTCTTGTTGCCAAG-AG--CCACC 5715 Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAG 132779 ||||| | |||||| || ||||||||||| || ||||| | | || | | | || || Sbjct 5714 AGCAGGCGGTCGGCAACAAACTCGATGTACTGGCACATGAGGGTAGCGTTCATG-CCGAG 5656 Query 132780 CAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGAC 132839 ||| || || || || ||||| || || |||||| || |||| || ||||||| Sbjct 5655 CAGGGCGACGGGAAGAGCGTCGGTAAGGAACTCTTGCTCCATCTCGACGGCCTCGGTGAT 5596 Query 132840 GATT---TCCCTAA---CGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAA 132893 ||| ||| | || ||| | ||| || | ||| | || ||| | || Sbjct 5595 GATCCTCTCCACAGTCTCGGGCGAAG-GCTTGGAC-TTG----ATGTGAGAGAAGAGCAG 5542 Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| ||||||||| |||| ||||||||| | ||| ||||| |||||| ||| || | Sbjct 5541 GCAGGCAAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAG 5482 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 ||| ||||| ||||| || || |||||||| || |||| ||||| || ||||| Sbjct 5481 GCCAGGCATCAGGCCACGCTTCTTGAGCCAGAAGATGGACGCGAAGGAACCGCTGAAGAA 5422 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 || |||||||| || || || || | ||| || | || || | | ||| Sbjct 5421 GATACCCTCGACAGCAGCAAAGGCAATCAGACGGGATGCAAAGGTCGAGTTCTTGTCACA 5362 Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCA----------TC---- 133119 ||||||||| || ||||| |||||||||| |||| ||| || | || Sbjct 5361 GATCCAGCGGAGGGCCCAGTCGGCCTTTTTCTTGATGCAGGGAACTAGGACGCGTCAGTA 5302 Query 133120 --------------------------------GTT-TCGATGGCGTTCAACAAACGGAGT 133146 ||| || |||||||| || | | ||| Sbjct 5301 TGTTGACTACAAGATGCATGTGACCACGTACTGTTGTCAATGGCGTTGAAGAG--GTAGT 5244 Query 133147 TTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTA 133204 | | | | || ||| | ||| |||||||| | | ||| || | || ||||| | Sbjct 5243 TGCGTTGCTTGGGCTCGCTAATGTACGTGTCGATCAAGAGCGAGTAAGTCTCGGAGTGAA 5184 Query 133205 CGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTT 133264 ||||||||| || || |||||||| ||||| || |||||| | ||| || || Sbjct 5183 TGTTCTCCATCATAATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGGATCTGAACCTCG- 5125 Query 133265 GAGC-GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCC 133323 |||| ||| |||||||||| || |||||||| |||||||| || ||||| ||||| Sbjct 5124 GAGCTGAAGCGCTCGACCAAGTTCTCGTTGACAATGCCGTCCGATGCAGCGAAGAAGGCA 5065 Query 133324 AGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTC---CCAGTCGCGCGTG 133380 || ||||| |||||| ||||||| || |||| |||| |||||| | | Sbjct 5064 AGGACGTGAGAGATGAAGAAACGCTCGTCATCATTCAGACGCTTGTTCCAGTCATGAAGG 5005 Query 133381 TCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||||||||| || | |||||| ||||||| ||||| |||||||| || |||||||| Sbjct 5004 TCCTTGGACAGATCAATCTCCTCAGCGGTCCAGAACGAGGCCTCGGCCTTCTTGTACAT 4946 >seq670 Length=49272 Score = 131 bits (144), Expect = 2e-25 Identities = 143/189 (76%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | | Sbjct 38588 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 38529 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| | ||||| ||||| || Sbjct 38528 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 38469 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || |||| ||||||||| ||||||||||||||| ||| Sbjct 38468 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 38409 Query 38433 G-AAGCGAC 38440 | | ||||| Sbjct 38408 GTACGCGAC 38400 >seq731 Length=88763 Score = 127 bits (140), Expect = 2e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAG 38325 |||| ||||| ||||||||| | || |||||| || |||||| | | | | | || Sbjct 88165 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAATGTGAAGT 88224 Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || || | ||||| ||||| |||||| | ||||| ||||| || || | ||| |||| Sbjct 88225 CCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTTATCTTCGCTGGCA 88284 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 | ||||| || |||| ||||||||| ||||||||||||||| ||||| ||||||| | Sbjct 88285 AGCAGCTTGAGGACGGTCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACGCTCC 88344 Query 38446 ATTTGGTGCTGCGTTTGAGAGGCGG 38470 | | || || || || | ||||| Sbjct 88345 ACCTCGTCCTCCGCCTGCGTGGCGG 88369 Score = 116 bits (128), Expect = 4e-21 Identities = 151/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| ||||||||| |||| |||||| | | |||| | | | |||| | || Sbjct 88449 TCACCGGCAAGACCATCACCCTCGAAGTCGAGTCTTCGGACACCATCGACAACG-TCAAG 88507 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 || |||| ||||| ||||| || || | ||||| ||||| ||||| | ||| ||| Sbjct 88508 TCGAAGATCCAAGACAAGGAGGGCATCCCTCCGGACCAGCAGCGCCTCATCTTCGCTGGC 88567 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || ||||| || |||| |||||||| ||||||||||||||| ||||| | || || Sbjct 88568 AAGCAGCTTGAGGACGGTCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCCACTCTC 88627 Query 38445 CATTTGGTGCTGCGTTTGAGAGGCGG 38470 || | || |||||| || | || || Sbjct 88628 CACCTCGTCCTGCGTCTGCGTGGTGG 88653 >seq363 Length=34683 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| |||||| ||||||| ||||| | || | ||| ||||| ||||| || Sbjct 5426 GACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAG 5367 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| ||||||||| |||||||||||||| ||||| |||| || || |||| ||| Sbjct 5366 GACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTCCACCTGGTCCTG 5307 Query 38457 CG 38458 || Sbjct 5306 CG 5305 >seq923 Length=2568 Score = 86.0 bits (94), Expect = 6e-12 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || || ||||| |||| ||||| | | Sbjct 102 ATGCAGATCTTCGTCAAGACCCTGACCGGAAAGACGATCACGCTCGAGGTCGAATCTTCG 161 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 || | | || |||| | || || || | ||||| ||||| || |||||| |||| Sbjct 162 GATACGATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCAT-CCCGCCTGACC 219 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | ||| ||||| ||||| || || | | || | ||||||| Sbjct 220 AGCAGCGCTTGATCTTCGCAGGCAAGCAGCTCGAGGATGGCAGGACGTTGTCGGACTACA 279 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| ||||| | || |||||||||||||| ||| Sbjct 280 ACATCCAGAAGGAGTCTACCCTGCATTTGGTGCTCCGT 317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500164415853440