Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20capitalensis_20[genbank_20GCA_5F001604925.1_202016-
03-31] 1,341 sequences; 32,454,403 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq496 212 6e-50
seq670 131 2e-25
seq731 127 2e-24
seq363 104 2e-17
seq923 86.0 6e-12
>seq496
Length=30664
Score = 212 bits (234), Expect = 6e-50
Identities = 589/899 (66%), Gaps = 76/899 (8%)
Strand=Plus/Minus
Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663
||||| || || || || ||||| || || || || || || | | |||||| |
Sbjct 5831 TTTTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGTTGAGCGAAATGTTC 5772
Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAG---TGCTTGGTGCCGATCAGGTCGACG 132720
||| || || |||||||||| | ||||||| | |||| |||| | || | ||
Sbjct 5771 TCCATGAAGTCGAAGGGGTTGGTCGAGTTGTAGAACTTCTTGTTGCCAAG-AG--CCACC 5715
Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAG 132779
||||| | |||||| || ||||||||||| || ||||| | | || | | | || ||
Sbjct 5714 AGCAGGCGGTCGGCAACAAACTCGATGTACTGGCACATGAGGGTAGCGTTCATG-CCGAG 5656
Query 132780 CAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGAC 132839
||| || || || || ||||| || || |||||| || |||| || |||||||
Sbjct 5655 CAGGGCGACGGGAAGAGCGTCGGTAAGGAACTCTTGCTCCATCTCGACGGCCTCGGTGAT 5596
Query 132840 GATT---TCCCTAA---CGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAA 132893
||| ||| | || ||| | ||| || | ||| | || ||| | ||
Sbjct 5595 GATCCTCTCCACAGTCTCGGGCGAAG-GCTTGGAC-TTG----ATGTGAGAGAAGAGCAG 5542
Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953
||| ||||||||| |||| ||||||||| | ||| ||||| |||||| ||| || |
Sbjct 5541 GCAGGCAAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAG 5482
Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013
||| ||||| ||||| || || |||||||| || |||| ||||| || |||||
Sbjct 5481 GCCAGGCATCAGGCCACGCTTCTTGAGCCAGAAGATGGACGCGAAGGAACCGCTGAAGAA 5422
Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073
|| |||||||| || || || || | ||| || | || || | | |||
Sbjct 5421 GATACCCTCGACAGCAGCAAAGGCAATCAGACGGGATGCAAAGGTCGAGTTCTTGTCACA 5362
Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCA----------TC---- 133119
||||||||| || ||||| |||||||||| |||| ||| || | ||
Sbjct 5361 GATCCAGCGGAGGGCCCAGTCGGCCTTTTTCTTGATGCAGGGAACTAGGACGCGTCAGTA 5302
Query 133120 --------------------------------GTT-TCGATGGCGTTCAACAAACGGAGT 133146
||| || |||||||| || | | |||
Sbjct 5301 TGTTGACTACAAGATGCATGTGACCACGTACTGTTGTCAATGGCGTTGAAGAG--GTAGT 5244
Query 133147 TTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTA 133204
| | | | || ||| | ||| |||||||| | | ||| || | || ||||| |
Sbjct 5243 TGCGTTGCTTGGGCTCGCTAATGTACGTGTCGATCAAGAGCGAGTAAGTCTCGGAGTGAA 5184
Query 133205 CGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTT 133264
||||||||| || || |||||||| ||||| || |||||| | ||| || ||
Sbjct 5183 TGTTCTCCATCATAATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGGATCTGAACCTCG- 5125
Query 133265 GAGC-GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCC 133323
|||| ||| |||||||||| || |||||||| |||||||| || ||||| |||||
Sbjct 5124 GAGCTGAAGCGCTCGACCAAGTTCTCGTTGACAATGCCGTCCGATGCAGCGAAGAAGGCA 5065
Query 133324 AGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTC---CCAGTCGCGCGTG 133380
|| ||||| |||||| ||||||| || |||| |||| |||||| | |
Sbjct 5064 AGGACGTGAGAGATGAAGAAACGCTCGTCATCATTCAGACGCTTGTTCCAGTCATGAAGG 5005
Query 133381 TCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
||||||||||| || | |||||| ||||||| ||||| |||||||| || ||||||||
Sbjct 5004 TCCTTGGACAGATCAATCTCCTCAGCGGTCCAGAACGAGGCCTCGGCCTTCTTGTACAT 4946
>seq670
Length=49272
Score = 131 bits (144), Expect = 2e-25
Identities = 143/189 (76%), Gaps = 1/189 (1%)
Strand=Plus/Minus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | |
Sbjct 38588 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 38529
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| |||||| | ||||| ||||| ||
Sbjct 38528 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 38469
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| ||||| ||||| || |||| ||||||||| ||||||||||||||| |||
Sbjct 38468 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 38409
Query 38433 G-AAGCGAC 38440
| | |||||
Sbjct 38408 GTACGCGAC 38400
>seq731
Length=88763
Score = 127 bits (140), Expect = 2e-24
Identities = 151/205 (74%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAG 38325
|||| ||||| ||||||||| | || |||||| || |||||| | | | | | ||
Sbjct 88165 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAATGTGAAGT 88224
Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385
|| || | ||||| ||||| |||||| | ||||| ||||| || || | ||| ||||
Sbjct 88225 CCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTTATCTTCGCTGGCA 88284
Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445
| ||||| || |||| ||||||||| ||||||||||||||| ||||| ||||||| |
Sbjct 88285 AGCAGCTTGAGGACGGTCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACGCTCC 88344
Query 38446 ATTTGGTGCTGCGTTTGAGAGGCGG 38470
| | || || || || | |||||
Sbjct 88345 ACCTCGTCCTCCGCCTGCGTGGCGG 88369
Score = 116 bits (128), Expect = 4e-21
Identities = 151/206 (73%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| ||||| ||||||||| |||| |||||| | | |||| | | | |||| | ||
Sbjct 88449 TCACCGGCAAGACCATCACCCTCGAAGTCGAGTCTTCGGACACCATCGACAACG-TCAAG 88507
Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384
|| |||| ||||| ||||| || || | ||||| ||||| ||||| | ||| |||
Sbjct 88508 TCGAAGATCCAAGACAAGGAGGGCATCCCTCCGGACCAGCAGCGCCTCATCTTCGCTGGC 88567
Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444
|| ||||| || |||| |||||||| ||||||||||||||| ||||| | || ||
Sbjct 88568 AAGCAGCTTGAGGACGGTCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCCACTCTC 88627
Query 38445 CATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| | || |||||| || | || ||
Sbjct 88628 CACCTCGTCCTGCGTCTGCGTGGTGG 88653
>seq363
Length=34683
Score = 104 bits (114), Expect = 2e-17
Identities = 96/122 (79%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| ||||| |||||| ||||||| ||||| | || | ||| ||||| ||||| ||
Sbjct 5426 GACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAG 5367
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|||| ||||||||| |||||||||||||| ||||| |||| || || |||| |||
Sbjct 5366 GACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTCCACCTGGTCCTG 5307
Query 38457 CG 38458
||
Sbjct 5306 CG 5305
>seq923
Length=2568
Score = 86.0 bits (94), Expect = 6e-12
Identities = 153/218 (70%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || || || || ||||| |||| ||||| | |
Sbjct 102 ATGCAGATCTTCGTCAAGACCCTGACCGGAAAGACGATCACGCTCGAGGTCGAATCTTCG 161
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361
|| | | || |||| | || || || | ||||| ||||| || |||||| ||||
Sbjct 162 GATACGATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCAT-CCCGCCTGACC 219
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| | || | ||| ||||| ||||| || || | | || | |||||||
Sbjct 220 AGCAGCGCTTGATCTTCGCAGGCAAGCAGCTCGAGGATGGCAGGACGTTGTCGGACTACA 279
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||||| ||||| | || |||||||||||||| |||
Sbjct 280 ACATCCAGAAGGAGTCTACCCTGCATTTGGTGCTCCGT 317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500164415853440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |