Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20capitalensis_20[genbank_20GCA_5F001604925.1_202016- 03-31] 1,341 sequences; 32,454,403 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq546 203 4e-47 seq496 96.9 4e-15 >seq546 Length=57559 Score = 203 bits (224), Expect = 4e-47 Identities = 567/868 (65%), Gaps = 13/868 (1%) Strand=Plus/Plus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 ||||| |||| || ||||||||||||||||| |||||| | | |||||||| | | Sbjct 43232 GGAAGAGCGAGAGAGGCCAAATTGCAAACAGCAACCTCATCAGGAGCCGTGTACTCAACA 43291 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || | |||||| || ||| || || | ||||| ||||| ||||| | Sbjct 43292 ATCTCGCAGCAGAGGTTGGAGCTGCGAATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGG 43351 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||||| ||||||||||||||||| |||| | || ||||| ||||| | || ||| || Sbjct 43352 TTGCAAGCATCCTTGTAGAGCATAAAGGGATTGCCGGTCTCGGTCTGAGCCTCGAGGATG 43411 Query 106637 GCCTTCCACACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTT 106696 || | ||||| | ||| | || | || | || || ||| |||||| | Sbjct 43412 GCATACCACAGCTTTTGGGCGCGGACTGTCTCGCGACCACGGCCTTCCCTTTCGTACCTC 43471 Query 106697 GTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGA 106756 |||||| | || ||||| || || | |||||| ||||| || |||| || || Sbjct 43472 TCGTAGAGCTCCTCGAACTCGTCGCCGTACACGTCGGCAAGACCCGGGGCCTCGTGAGGG 43531 Query 106757 CAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCAC 106816 || || |||| ||||| ||| | ||| || ||||||||||| || || ||||||||| Sbjct 43532 CAAAAGAGAGTCCATTCACCGTTTTGCTCCACACGCTTCATGAACAGATCGGGAATCCAC 43591 Query 106817 AGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCA 106876 | | ||||||| || | || |||| || | || ||||| || | || Sbjct 43592 AACGCGTAAAAGAGGTCGCGCGCGCGGACCTCCTCCTTTCCGTGGTTCTTGCGAAGGTCG 43651 Query 106877 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGA 106936 ||||| | || || |||||||| ||||| || |||| || | || || || Sbjct 43652 AGGAAGGGGAAGACGTCAGCGTGCCAAGGCTCCAGGTAGATGGCAAAAGCACC---AGGA 43708 Query 106937 CGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 106990 ||| ||| |||| | || ||||| || ||| ||| | || || ||||| ||| Sbjct 43709 CGCTTGTTGCCACCTTGGTCGACGTAGCGAGCAGTGTTGTTGTAGACTCGGAGCATGGGA 43768 Query 106991 ATAATACCATCTGATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGGCTCTCACAT 107048 || | || | || ||| || || || || || ||| | ||| | | | Sbjct 43769 ATCAGGCCGTTGGAGGTACCGTTGGTGCCAGCAATGTAGGAGCCT--GTGGAACGAATAC 43826 Query 107049 CATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAG 107108 |||| || | ||||| || || ||| ||| || || ||||| | | |||| Sbjct 43827 GGTGGACGTTGAGACCAATTCCACCGGCCGTCTTGGAAATCATAGCACAAGTCTTGAGAG 43886 Query 107109 TTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCT 107168 | | || ||||| | ||| ||||||||| || |||| | |||||| | | || Sbjct 43887 TGTCGTAAATACCCTCGATGCTGTCCTCCTTCATGTCGATCAAGAAGCATGATGCAAGCT 43946 Query 107169 GCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGG 107228 | || | || |||||||| ||||| | ||| || | || ||| | || || | Sbjct 43947 GGGGCTTGGGGGTACCAGCGTTGAACAAGGTGGGGGAGGCATGAGTAAAGCACTTTTCCG 44006 Query 107229 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCA 107288 ||||| | ||| || || | | || |||||||| |||||||| |||| || | Sbjct 44007 ACATCAACTTGTACGTTTCGAGGGCACTCGTTATGTCTTCGCCGTGGATACCGACAGCAA 44066 Query 107289 CACGCATAAACATGTATTGGGGTGTTTC 107316 ||||||| | ||||| || ||| |||| Sbjct 44067 CACGCATGATCATGTGCTGCGGTCTTTC 44094 >seq496 Length=30664 Score = 96.9 bits (106), Expect = 4e-15 Identities = 288/439 (66%), Gaps = 18/439 (4%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| ||||| |||||||| |||||||||||||| || | || |||||| ||||| Sbjct 5825 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGTTGAGCGAAATGTTCTCCATG 5766 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACC--CCAACTTGTTTGAG 117098 ||||| || || || ||| ||| | | | | || || ||| | || Sbjct 5765 AAGTCGAAGGGGTTGGTCGAGTTGTAGAACTTCTTGTTGCCAAGAGCCACC-------AG 5713 Query 117099 GAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG 117158 || || || | ||| |||| ||||||| | |||| || |||||| |||| || Sbjct 5712 CAGGCGGTCGGCAACAAACTCGATGTACTGGCACATGAGGGTAGCGTTCATGCCGAGCAG 5653 Query 117159 ATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGAT 117218 || || ||||| | |||| ||| ||| ||||| || ||||| | | ||| Sbjct 5652 GGCGACGGGAAGAGCGTCGGTAAGGAACTCTTGCTCCATCTCGACGGCCTCGGTGATGAT 5593 Query 117219 GGCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTT-GAAGAGCTCCACGGCAA 117277 | | ||| |||| | || || || | || ||||||| ||||| Sbjct 5592 CCTCTCCACAGTCTCGGGCGAAGG-CTTGGACTTGATGTGAGAGAAGAGCAGGCAGGCAA 5534 Query 117278 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCA 117337 | || ||| | ||||| || ||||| || || || || |||||| ||||| |||| Sbjct 5533 AGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGGCCAGGCA 5474 Query 117338 TGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCC 117396 | || || |||||||| | ||| | || | ||| ||| || ||| ||||||||||||| Sbjct 5473 TCAGGCCACGCTTCTTGAGCCAGAAGATGGACGC-GAAGGAACCGCTGAAGAAGATACCC 5415 Query 117397 TCCACACACGCAAACGCAA 117415 || ||| ||||| |||| Sbjct 5414 TCGACAGCAGCAAAGGCAA 5396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589970910446840