Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20capitalensis_20[genbank_20GCA_5F001604925.1_202016- 03-31] 1,341 sequences; 32,454,403 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq838 123 2e-23 >seq838 Length=49465 Score = 123 bits (136), Expect = 2e-23 Identities = 421/660 (64%), Gaps = 56/660 (8%) Strand=Plus/Minus Query 29779 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 29838 ||||| | ||| | ||| |||||| | ||||| || || ||||||||||| ||||| Sbjct 13655 GGCTCGCGCTCCAACTGCACCTTCAGGGCCTCCACATGGTCGAGGTAGACGTGGGCGTCG 13596 Query 29839 CCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG 29898 |||| |||||| | | || || | || || |||||| |||| ||| | ||| Sbjct 13595 CCCATGGTGTGCGTTAGCGAGCCGGGCACCAGGTCGCAGACGTGCGCCAGCATATGCGTC 13536 Query 29899 AGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGG 29958 || || | ||||||||| ||||| || || || |||||||||||||| | |||| ||| Sbjct 13535 AGCAGCGCGTAGCTGGCAATGTTGAAAGGCACGCCGAGCCCCATGTCGCAGGACCGTTGG 13476 Query 29959 T---AGAGC---TG----ACAC-----------GAGAGCTCTCCGTCG------------ 29985 | | ||| || || | || |||| || || Sbjct 13475 TACAACAGCGTGTGCAGAACGCCCTTTTGCTTGGATCCCTCTTCGCCGTTTTCGCCGCGC 13416 Query 29986 ---------------CTCACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCC 30027 ||||| || ||||| | ||||| ||||| || || || ||| Sbjct 13415 TTGGCCGCGGGAAAGCTCACATAGAACTGCGCAAACATG---TGGCAAGGCGGCAGCGCC 13359 Query 30028 ATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTG 30087 || || | ||||||||| |||| || ||||||||| | ||| || ||| Sbjct 13358 ATCTTCTTCAGTTGGGCGGGGTTCCACGCGCTCATGATGATGCGGCGGTCGAAAGGCTTG 13299 Query 30088 TTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCC 30147 || | | ||| | | | | |||||| || || || || | |||||| || Sbjct 13298 TTGCGCAGCTTGTCGATGACTTCGGCCAGCTGGTCGACGCCTTGTCCGGTGTAGTCGGCG 13239 Query 30148 CTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGG 30207 |||| ||||||| || || ||||||| ||| ||||| ||||| || ||||| ||| Sbjct 13238 TGGCAGTCCTTGTACTCGGCGCCAAAATGCCGCCATTGGAATCCGTAAACTGGTCCAAGG 13179 Query 30208 TCTCCCTCTTCCCTGTGCTCGAAGCCCCTCT-TGTCCAAAAAGTCTCTGGAACCGTTGGC 30266 || |||||||| | ||| || || || | |||||| ||| |||| || |||||| | Sbjct 13178 TCGCCCTCTTCGCGGTG-TCCCAGTCCGACGCTGTCCAGAAACTCTCGAGACCCGTTGCC 13120 Query 30267 GTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAA 30326 ||||||||| || | || || || ||| || ||| ||| || | ||| Sbjct 13119 GTCCCAGATTTTGATTCCTGCATCTGACAGCGGCTTCGAGGACGTGCTGCCCGAAATGAA 13060 Query 30327 CCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30386 |||||||||||| | | |||||| | ||| || | |||||| ||||| || || || Sbjct 13059 CCACAGCAGCTCGGCAATGACGGCGCGCAGAAATACGCGCTTGGTGGTGAGAAGCGGCAA 13000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408610921783793