Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20capitalensis_20[genbank_20GCA_5F001604925.1_202016-
03-31] 1,341 sequences; 32,454,403 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq960 105 2e-17
seq585 104 7e-17
seq622 87.8 5e-12
>seq960
Length=19030
Score = 105 bits (116), Expect = 2e-17
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 251431 TGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGATG-CACC 251489
||||||| ||| || || || | || | || || |||| |||| | | || ||||
Sbjct 12211 TGGACGCGGTAGGCGTCCGAGACTTCGAACAGACGCTCCTTCAAGAAG-GCGCTGGCACC 12269
Query 251490 GTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCT 251549
||| |||||||| ||||| ||||||||||| |||||||| ||||||||||| | || |
Sbjct 12270 GTGGGAAATCATGCAATCGCGCTCCATTTCTCCGAAACGCAGACCACCATCTCTGGCACG 12329
Query 251550 ACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTT 251609
||||||| | || ||||| || ||| | || ||||| || ||| || |||
Sbjct 12330 ACCCTCGACGGGTTGACGGGTCAGAATCTGCACGGGACCACGGGCACGGGCGTGGATCTT 12389
Query 251610 ATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA 251659
|| | ||||| || |||||||||||| ||| || || | |||||
Sbjct 12390 GTCGTCGACCATGTGGCGAAGACGCTGGTAGTATGTCGGGCCCAAGAAGA 12439
Score = 87.8 bits (96), Expect = 5e-12
Identities = 111/150 (74%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898
||||| || ||||||||| ||||| || || || |||||||||| |||||| | ||
Sbjct 12619 TGGGCAATGGTCATACGAGAAGGAATGGCGTGCGGGTTGATGATGAGGTCGGGGGTGAGA 12678
Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957
||||| |||||| ||||| |||| | | || | | ||||| || ||||| ||
Sbjct 12679 CCATCCCGAGTGAATGGCATGTCCTCATGG-CGGTAGGTAATACCAATGGTACCCTTCTG 12737
Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987
||||||||| || ||||||||||||||
Sbjct 12738 TCCGTGACGCGAGGCAAACTTATCACCAAT 12767
>seq585
Length=148504
Score = 104 bits (114), Expect = 7e-17
Identities = 191/280 (68%), Gaps = 0/280 (0%)
Strand=Plus/Minus
Query 302564 TCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTT 302623
|||| | |||||||| ||||| | ||| |||||||| ||||||||| || || |
Sbjct 71238 TCATGACGTCTTCCAAGGCCTTGACCAGACGGCGCTGAATGTAACCAGTTTCAGCAGTCT 71179
Query 302624 TTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCG 302683
| || || |||||||| ||||| |||||||| |||| || ||||| || | ||| |
Sbjct 71178 TGACGGCAGTATCAATCAGACCCTCACGACCAGCCATGGCGTGGAAAAAGAACTCGGTAG 71119
Query 302684 GTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGA 302743
|| || || | | | ||| | | ||| || || || || | ||||| | |||
Sbjct 71118 GTGTCAGTCCACGCAGGTACGAGTTTTGAACAAAGCCTCGGGCAGCTGGCGAGTAGTCAT 71059
Query 302744 ACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAA 302803
|||||||||||||||||| || | || | | || | || || ||||| || || |
Sbjct 71058 CCTTGGTAAAGTGTGGCAGAGTGCGGTATTTGAAACCAAACGGAATGCGCTTGCCTTCGA 70999
Query 302804 CGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843
| ||| ||||| | | | |||| |||||||| ||
Sbjct 70998 CCGACTGTTGTCCGACCAAGGCCGTCATTTGCGAAATGTT 70959
Score = 96.9 bits (106), Expect = 1e-14
Identities = 121/163 (74%), Gaps = 5/163 (3%)
Strand=Plus/Minus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | | ||| || ||||| |||| ||||| |||||| | ||||||||||
Sbjct 72004 AGAATTTCCTTCAGACGAGGGACACCCAGGGTAACGTT---CTTGGAAGAAACACCAGCA 71948
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|||||||| || || || || | || || | ||||||||||| ||| ||||| |
Sbjct 71947 AAGTGGAAGGTGTTGAGCGTCATCTGCGTGGCGGGCTCACCAATGGATTGCGCCGCCAAG 71888
Query 301933 ATACCAACCATTTCTCCTGGTGCT-ACAATAGACTTCTTGTAG 301974
| |||||||||||| || || ||| ||||| | | | ||| ||
Sbjct 71887 ACACCAACCATTTCGCCAGG-GCTCACAATGGCCCTGTTGAAG 71846
>seq622
Length=83010
Score = 87.8 bits (96), Expect = 5e-12
Identities = 117/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 251497 ATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTCG 251556
|||| ||| |||||||||||||| |||| ||| ||||| || ||||||| | |||||||
Sbjct 37738 ATCAGACAGTCACGCTCCATTTCTCCGAGACGTAGACCGCCGTCGCGAGAACGACCCTCG 37797
Query 251557 GCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTATCATTT 251616
| ||||| || ||||| | | |||||| | ||||| || ||| || |
Sbjct 37798 GTTGGCTGGCGGGTGAGGATGGCACGAGGACCACGCGCACGGCTGTGCATCTTGTCTTGC 37857
Query 251617 ACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA 251659
||||| |||||||| |||||| | ||| |||| |||||
Sbjct 37858 ACCATGTGCTTGAGCTTTTGGTAGTAGATGGGCCCGAAGAAGA 37900
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471792311873917
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |