Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20capitalensis_20[genbank_20GCA_5F001604925.1_202016- 03-31] 1,341 sequences; 32,454,403 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq496 194 2e-43 seq303 154 2e-31 seq546 123 3e-22 seq642 113 6e-19 seq372 111 2e-18 >seq496 Length=30664 Score = 194 bits (214), Expect = 2e-43 Identities = 236/319 (74%), Gaps = 12/319 (4%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| |||||||||||||| | |||||| || Sbjct 5834 GCCTTTTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGTTGAGCGAAATG 5775 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| || |||||| ||| | | || || | | | Sbjct 5774 TTCTCCATGAAGTCGAAGGGGTTGGTCGAGTTGTAGAACTTCTTGTTGCCAAGAGCCACC 5715 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct 5714 AGCAGGCGGTCGGCAACAAACTCGATGTACTGGCACATGAGGGTAGCGTTCATGCCGAGC 5655 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || || | ||| | | ||||||| ||| ||||||||||||||| |||| Sbjct 5654 AGGGCGACGGGAAGAGCGTCGGTAAGGAACTCTTGCTCCATCTCGACGGCCTCGGTGATG 5595 Query 868931 ATCTGCCTGGGCAC---GTCGGCCGAGGGCTTG---TTGACGAGCATCGTGTAGAGCAGG 868984 || ||| ||| |||| ||| |||||| |||| | | | | |||||||| Sbjct 5594 AT---CCTCTCCACAGTCTCGGGCGAAGGCTTGGACTTGATGTG---AGAGAAGAGCAGG 5541 Query 868985 CAGGCAAAGTCGCAGTGCA 869003 |||||||||||| ||||| Sbjct 5540 CAGGCAAAGTCGGTGTGCA 5522 Score = 96.9 bits (106), Expect = 4e-14 Identities = 142/198 (72%), Gaps = 15/198 (8%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| || ||| | |||||| |||| ||||| ||||| ||||| |||||| Sbjct 5519 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGGCCAGGCATCAGGCCACGCTTC 5460 Query 869240 TTGAGCCAAAAGATG---GCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCA 869296 |||||||| |||||| ||| || ||| || ||| ||||| |||||||| || ||| Sbjct 5459 TTGAGCCAGAAGATGGACGCGAAGGAACCGC---TGAAGAAGATACCCTCGACAGCAGCA 5403 Query 869297 AAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATC 869353 ||| | || || || |||||| |||||| | ||||| |||||| | Sbjct 5402 AAGGCAATCAGACGGGATGCAAAG--GTCGAG----TTCTTGTCACAGATCCAGCGGAGG 5349 Query 869354 GCCCAGTCGGCCTTTTTC 869371 |||||||||||||||||| Sbjct 5348 GCCCAGTCGGCCTTTTTC 5331 >seq303 Length=7887 Score = 154 bits (170), Expect = 2e-31 Identities = 323/472 (68%), Gaps = 16/472 (3%) Strand=Plus/Minus Query 1852166 GCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCG 1852225 || || ||||| | ||| || || || || || ||||||||||||||| ||||||| Sbjct 5364 GCGAAAATCTTCCTCTGATCCACACCACCGAATTGTACGTCGACGTCGAGGTACTGCTCG 5305 Query 1852226 TCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTG-CGGTCCATCTT 1852284 || ||||||||||| |||||||||| | | ||| || |||||| | || | ||| Sbjct 5304 TCCAGGGCCTGCATCAGCGGGTAGATGAGGCCAGACAGCAGGGGGTTGTCCGT-CTGCTT 5246 Query 1852285 GACCACCTGAGCGGCGGCC--TTTTGCGCCGTGC-CGGTGCGCA-CGTGCGCCGCGAGTC 1852340 ||| |||| || | ||| || ||| ||||| ||||| || |||| | || | Sbjct 5245 GACAACCTCGGCACCAGCCCTCTTCGCGTCGTGCTCGGTGGTCATGGTGCTC----AGCC 5190 Query 1852341 GGTAGAGGTCGAGCGCGTAGGCGCCGCCGCAC---TGGTACTCGGTGCCGCGCACAAACT 1852397 | ||||| | | |||| || | || || ||||||||| |||| ||||||||| Sbjct 5189 GCAGCAGGTCCATCATGTAGTCG--GACG-ACTTTTGGTACTCGCTGCCCAGCACAAACT 5133 Query 1852398 CGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTACC 1852457 | || | | | | || |||||| | | || || | | | || |||||| ||| Sbjct 5132 CCAGCCGGTCGACCGACACGCCCACGGCCTTCAGGCTCTCTGTTATCACAAACTTGTAGT 5073 Query 1852458 AGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTGCA 1852517 | | ||||| | ||| || || |||| |||| ||| |||||| ||||| | Sbjct 5072 ACTTGGCGCGGTGGTTGACGAGCTCAATTGGCGCCTTGAGGTTATCGAGGAACGCGTGGA 5013 Query 1852518 CGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAGA 1852577 |||||||| | ||| ||||| ||||||| ||||| || || | || | || | | Sbjct 5012 TGTCGGCAAGCAAGATTTTGACGTGACAGCCCGCCTGCAGGAACTGCGCAATCTTCAGCA 4953 Query 1852578 TGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATA 1852629 | |||||||||||||| ||||||| ||||||| ||| |||||||| || Sbjct 4952 TCGGCACAAAGTAGCCGCAGTGCGGGCGTCCCGTCGTCGCTGTGCCCCAGTA 4901 >seq546 Length=57559 Score = 123 bits (136), Expect = 3e-22 Identities = 271/408 (66%), Gaps = 14/408 (3%) Strand=Plus/Plus Query 1628200 GTACCCAGGTTCTGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGC 1628259 || || ||||||| ||||||| | | ||||| || ||||||| |||||| |||| Sbjct 43322 GTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCATCCTTGTAGAGCATAAAGGGA 43381 Query 1628260 GCGCCGGTCTCGATCTGCGCCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACA 1628319 |||||||||| |||| ||| ||| |||||| |||| | || | ||| | ||| Sbjct 43382 TTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCATACCACAGCTTTTGGGCGCG---GACT 43438 Query 1628320 GTC-CGCG--CGCGGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCG 1628376 ||| |||| | ||||| | || || | ||||| Sbjct 43439 GTCTCGCGACCACGGCCTTCCCTTTCGTACCTCTCGTAGAGCTCCTCGAACTCGTCGCCG 43498 Query 1628377 TAGCAC-TCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGT 1628435 || ||| ||| || || || |||||| || |||||||| | ||| || |||| | Sbjct 43499 TA-CACGTCGGCAAGACCCGGGGCCTCGTGAGGGCAAAAGAGAGTCCATTC---ACCGTT 43554 Query 1628436 ---CACCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGC 1628492 | || | || ||| || || || |||||| |||||||||||||||||||| Sbjct 43555 TTGCTCCACACGCTTCATGAACAGATCGGGAATCCACAACGCGTAAAAGAGGTCGCGCGC 43614 Query 1628493 CCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTG 1628552 ||| ||||||||| ||||||||||| |||||||| || || | ||| ||||| Sbjct 43615 GCGGACCTCCTCCTTTCCGTGGTTCTTGCGAAGGTCGAGGAAGGGGAAGACGTCAGCGTG 43674 Query 1628553 CCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||| |||||||||||| |||||| || || |||||| ||| || Sbjct 43675 CCAAGGCTCCAGGTAGATGGCAAAAGCACCAGGACGCTTGTTGCCACC 43722 Score = 118 bits (130), Expect = 1e-20 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 |||||||||||||| || |||| ||| |||| ||||||||||| | ||||||||||| Sbjct 43724 TGGTCGACGTAGCGAGCAGTGTTGTTGTAGACTCGGAGCATGGGAATCAGGCCGTTGGAG 43783 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 ||||||||||| || | ||||| ||| | || || | ||| || | || Sbjct 43784 GTACCGTTGGTGCCAGCAATGTAGGAGCCTGTGGAACGAATACGGTGGACGTTGAGACCA 43843 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||||| |||||| || | || || ||||| |||||||| || |||||| Sbjct 43844 ATTCCACCGGCCGTCTTGGAAATCATAGCACAAGTCTTGAGAGTGTCGTAAATACCCTCG 43903 Query 1630246 ATCGAGTCGGCCTTCATGTC 1630265 || ||| |||||||||| Sbjct 43904 ATGCTGTCCTCCTTCATGTC 43923 >seq642 Length=60501 Score = 113 bits (124), Expect = 6e-19 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||||| || |||||| ||||||| || | || |||||| | ||||||||| Sbjct 13405 GCTGCGAACTACCTGGATATCAAGGCTCTGCTGGACGTCGGTTGCAAGACCGTGGCCAAC 13464 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 |||||||||||||||||||| || || ||||| ||||| || ||||| || ||| Sbjct 13465 ATGATCAAGGGCAAGTCGCCGGACGAAATCCGGAAGACTTTCAACATTCAGAACG 13519 >seq372 Length=37408 Score = 111 bits (122), Expect = 2e-18 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104 ||||||| || ||||||||||| || || ||| ||| || ||||| | || || |||| Sbjct 15910 AGGACAGTATAGGCGGCACGGTCACCTGTGTGATTCGTAATGTGCCTACTGGACTGGGCG 15851 Query 19105 AGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164 |||| || || |||||| | |||||| ||||||||||| ||||| || || || | Sbjct 15850 AGCCTTGTTTCGACAAGCTTGAGGCCATACTCGCCCACGCGATGCTTAGCATTCCCGCAA 15791 Query 19165 CCAAGGGATTCGAGATTGG 19183 ||||||| ||||||||||| Sbjct 15790 CCAAGGGTTTCGAGATTGG 15772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107029151260097