Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20capitalensis_20[genbank_20GCA_5F001604925.1_202016-
03-31] 1,341 sequences; 32,454,403 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq496 194 2e-43
seq303 154 2e-31
seq546 123 3e-22
seq642 113 6e-19
seq372 111 2e-18
>seq496
Length=30664
Score = 194 bits (214), Expect = 2e-43
Identities = 236/319 (74%), Gaps = 12/319 (4%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || ||| |||||| |||||||||||||| | |||||| ||
Sbjct 5834 GCCTTTTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGTTGAGCGAAATG 5775
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| || |||||| ||| | | || || | | |
Sbjct 5774 TTCTCCATGAAGTCGAAGGGGTTGGTCGAGTTGTAGAACTTCTTGTTGCCAAGAGCCACC 5715
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 5714 AGCAGGCGGTCGGCAACAAACTCGATGTACTGGCACATGAGGGTAGCGTTCATGCCGAGC 5655
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || || | ||| | | ||||||| ||| ||||||||||||||| ||||
Sbjct 5654 AGGGCGACGGGAAGAGCGTCGGTAAGGAACTCTTGCTCCATCTCGACGGCCTCGGTGATG 5595
Query 868931 ATCTGCCTGGGCAC---GTCGGCCGAGGGCTTG---TTGACGAGCATCGTGTAGAGCAGG 868984
|| ||| ||| |||| ||| |||||| |||| | | | | ||||||||
Sbjct 5594 AT---CCTCTCCACAGTCTCGGGCGAAGGCTTGGACTTGATGTG---AGAGAAGAGCAGG 5541
Query 868985 CAGGCAAAGTCGCAGTGCA 869003
|||||||||||| |||||
Sbjct 5540 CAGGCAAAGTCGGTGTGCA 5522
Score = 96.9 bits (106), Expect = 4e-14
Identities = 142/198 (72%), Gaps = 15/198 (8%)
Strand=Plus/Minus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
|| ||||| || ||| | |||||| |||| ||||| ||||| ||||| ||||||
Sbjct 5519 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGGCCAGGCATCAGGCCACGCTTC 5460
Query 869240 TTGAGCCAAAAGATG---GCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCA 869296
|||||||| |||||| ||| || ||| || ||| ||||| |||||||| || |||
Sbjct 5459 TTGAGCCAGAAGATGGACGCGAAGGAACCGC---TGAAGAAGATACCCTCGACAGCAGCA 5403
Query 869297 AAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATC 869353
||| | || || || |||||| |||||| | ||||| |||||| |
Sbjct 5402 AAGGCAATCAGACGGGATGCAAAG--GTCGAG----TTCTTGTCACAGATCCAGCGGAGG 5349
Query 869354 GCCCAGTCGGCCTTTTTC 869371
||||||||||||||||||
Sbjct 5348 GCCCAGTCGGCCTTTTTC 5331
>seq303
Length=7887
Score = 154 bits (170), Expect = 2e-31
Identities = 323/472 (68%), Gaps = 16/472 (3%)
Strand=Plus/Minus
Query 1852166 GCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCG 1852225
|| || ||||| | ||| || || || || || ||||||||||||||| |||||||
Sbjct 5364 GCGAAAATCTTCCTCTGATCCACACCACCGAATTGTACGTCGACGTCGAGGTACTGCTCG 5305
Query 1852226 TCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTG-CGGTCCATCTT 1852284
|| ||||||||||| |||||||||| | | ||| || |||||| | || | |||
Sbjct 5304 TCCAGGGCCTGCATCAGCGGGTAGATGAGGCCAGACAGCAGGGGGTTGTCCGT-CTGCTT 5246
Query 1852285 GACCACCTGAGCGGCGGCC--TTTTGCGCCGTGC-CGGTGCGCA-CGTGCGCCGCGAGTC 1852340
||| |||| || | ||| || ||| ||||| ||||| || |||| | || |
Sbjct 5245 GACAACCTCGGCACCAGCCCTCTTCGCGTCGTGCTCGGTGGTCATGGTGCTC----AGCC 5190
Query 1852341 GGTAGAGGTCGAGCGCGTAGGCGCCGCCGCAC---TGGTACTCGGTGCCGCGCACAAACT 1852397
| ||||| | | |||| || | || || ||||||||| |||| |||||||||
Sbjct 5189 GCAGCAGGTCCATCATGTAGTCG--GACG-ACTTTTGGTACTCGCTGCCCAGCACAAACT 5133
Query 1852398 CGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTACC 1852457
| || | | | | || |||||| | | || || | | | || |||||| |||
Sbjct 5132 CCAGCCGGTCGACCGACACGCCCACGGCCTTCAGGCTCTCTGTTATCACAAACTTGTAGT 5073
Query 1852458 AGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTGCA 1852517
| | ||||| | ||| || || |||| |||| ||| |||||| ||||| |
Sbjct 5072 ACTTGGCGCGGTGGTTGACGAGCTCAATTGGCGCCTTGAGGTTATCGAGGAACGCGTGGA 5013
Query 1852518 CGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAGA 1852577
|||||||| | ||| ||||| ||||||| ||||| || || | || | || | |
Sbjct 5012 TGTCGGCAAGCAAGATTTTGACGTGACAGCCCGCCTGCAGGAACTGCGCAATCTTCAGCA 4953
Query 1852578 TGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATA 1852629
| |||||||||||||| ||||||| ||||||| ||| |||||||| ||
Sbjct 4952 TCGGCACAAAGTAGCCGCAGTGCGGGCGTCCCGTCGTCGCTGTGCCCCAGTA 4901
>seq546
Length=57559
Score = 123 bits (136), Expect = 3e-22
Identities = 271/408 (66%), Gaps = 14/408 (3%)
Strand=Plus/Plus
Query 1628200 GTACCCAGGTTCTGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGC 1628259
|| || ||||||| ||||||| | | ||||| || ||||||| |||||| ||||
Sbjct 43322 GTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCATCCTTGTAGAGCATAAAGGGA 43381
Query 1628260 GCGCCGGTCTCGATCTGCGCCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACA 1628319
|||||||||| |||| ||| ||| |||||| |||| | || | ||| | |||
Sbjct 43382 TTGCCGGTCTCGGTCTGAGCCTCGAGGATGGCATACCACAGCTTTTGGGCGCG---GACT 43438
Query 1628320 GTC-CGCG--CGCGGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCG 1628376
||| |||| | ||||| | || || | |||||
Sbjct 43439 GTCTCGCGACCACGGCCTTCCCTTTCGTACCTCTCGTAGAGCTCCTCGAACTCGTCGCCG 43498
Query 1628377 TAGCAC-TCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGT 1628435
|| ||| ||| || || || |||||| || |||||||| | ||| || |||| |
Sbjct 43499 TA-CACGTCGGCAAGACCCGGGGCCTCGTGAGGGCAAAAGAGAGTCCATTC---ACCGTT 43554
Query 1628436 ---CACCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGC 1628492
| || | || ||| || || || |||||| ||||||||||||||||||||
Sbjct 43555 TTGCTCCACACGCTTCATGAACAGATCGGGAATCCACAACGCGTAAAAGAGGTCGCGCGC 43614
Query 1628493 CCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTG 1628552
||| ||||||||| ||||||||||| |||||||| || || | ||| |||||
Sbjct 43615 GCGGACCTCCTCCTTTCCGTGGTTCTTGCGAAGGTCGAGGAAGGGGAAGACGTCAGCGTG 43674
Query 1628553 CCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600
||| |||||||||||| |||||| || || |||||| ||| ||
Sbjct 43675 CCAAGGCTCCAGGTAGATGGCAAAAGCACCAGGACGCTTGTTGCCACC 43722
Score = 118 bits (130), Expect = 1e-20
Identities = 146/200 (73%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125
|||||||||||||| || |||| ||| |||| ||||||||||| | |||||||||||
Sbjct 43724 TGGTCGACGTAGCGAGCAGTGTTGTTGTAGACTCGGAGCATGGGAATCAGGCCGTTGGAG 43783
Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185
||||||||||| || | ||||| ||| | || || | ||| || | ||
Sbjct 43784 GTACCGTTGGTGCCAGCAATGTAGGAGCCTGTGGAACGAATACGGTGGACGTTGAGACCA 43843
Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245
|| || ||||||| |||||| || | || || ||||| |||||||| || ||||||
Sbjct 43844 ATTCCACCGGCCGTCTTGGAAATCATAGCACAAGTCTTGAGAGTGTCGTAAATACCCTCG 43903
Query 1630246 ATCGAGTCGGCCTTCATGTC 1630265
|| ||| ||||||||||
Sbjct 43904 ATGCTGTCCTCCTTCATGTC 43923
>seq642
Length=60501
Score = 113 bits (124), Expect = 6e-19
Identities = 94/115 (82%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
|| || |||||||| || |||||| ||||||| || | || |||||| | |||||||||
Sbjct 13405 GCTGCGAACTACCTGGATATCAAGGCTCTGCTGGACGTCGGTTGCAAGACCGTGGCCAAC 13464
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300
|||||||||||||||||||| || || ||||| ||||| || ||||| || |||
Sbjct 13465 ATGATCAAGGGCAAGTCGCCGGACGAAATCCGGAAGACTTTCAACATTCAGAACG 13519
>seq372
Length=37408
Score = 111 bits (122), Expect = 2e-18
Identities = 108/139 (78%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104
||||||| || ||||||||||| || || ||| ||| || ||||| | || || ||||
Sbjct 15910 AGGACAGTATAGGCGGCACGGTCACCTGTGTGATTCGTAATGTGCCTACTGGACTGGGCG 15851
Query 19105 AGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164
|||| || || |||||| | |||||| ||||||||||| ||||| || || || |
Sbjct 15850 AGCCTTGTTTCGACAAGCTTGAGGCCATACTCGCCCACGCGATGCTTAGCATTCCCGCAA 15791
Query 19165 CCAAGGGATTCGAGATTGG 19183
||||||| |||||||||||
Sbjct 15790 CCAAGGGTTTCGAGATTGG 15772
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107029151260097
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |