Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20capitalensis_20[genbank_20GCA_5F001604925.1_202016-
03-31] 1,341 sequences; 32,454,403 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq670 109 4e-19
seq923 104 2e-17
seq363 104 2e-17
seq731 96.9 2e-15
>seq670
Length=49272
Score = 109 bits (120), Expect = 4e-19
Identities = 137/186 (74%), Gaps = 8/186 (4%)
Strand=Plus/Plus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||| ||||| ||||| || ||| |||| | || || || ||||| ||||||||||
Sbjct 38408 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 38467
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
|||| || |||||||| | || | ||||||||||| | || || ||||| ||
Sbjct 38468 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT- 38524
Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| ||||| || || |||||| || | ||| |||||||| ||||| ||||||||
Sbjct 38525 -TGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTG 38583
Query 34964 ACAAAG 34969
|| |||
Sbjct 38584 ACGAAG 38589
>seq923
Length=2568
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||| ||||| |||||||| | | | |||| || || ||||| || |||||
Sbjct 293 CTCCTTCTGGATGTTGTAGTCCGACAACGTCCTGCCATCCTCGAGCTGCTTGCCTGCGAA 234
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
||||| || |||||||| |||| | ||||||||||| | || || ||||||
Sbjct 233 GATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTT 174
Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965
| |||| || | ||||| || | || || |||||||| || |||||||| ||
Sbjct 173 GTCAATCGTATCCGAAGATTCGACCTCGAGCGTGATCGTCTTTCCGGTCAGGGTCTTGAC 114
Query 34966 AAAGATCTGCAT 34977
|||||||||||
Sbjct 113 GAAGATCTGCAT 102
>seq363
Length=34683
Score = 104 bits (114), Expect = 2e-17
Identities = 95/120 (79%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||||||||| | ||| ||||||||| ||||| |||||||| ||| |||| | ||
Sbjct 5307 CAGGACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTC 5366
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| ||||||||||||| || |||||||| | || | |||||||||||
Sbjct 5367 CTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTC 5426
>seq731
Length=88763
Score = 96.9 bits (106), Expect = 2e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||| ||||| | ||| ||||||||| ||||| ||||| || ||| |||| | ||
Sbjct 88639 CAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCGTC 88580
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| || |||||||| || || |||||||| | || | |||||||||||
Sbjct 88579 CTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTC 88520
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || |||||| | || | || | |||||| || | ||| |||||
Sbjct 88519 TTGGATCTTCGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACTTCGAGGGTGATGGT 88460
Query 34945 CTTTCCCGTGA 34955
||| || ||||
Sbjct 88459 CTTGCCGGTGA 88449
Score = 91.5 bits (100), Expect = 1e-13
Identities = 138/194 (71%), Gaps = 8/194 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||| | || ||||||||| ||||| ||||| || ||| |||| | ||
Sbjct 88354 AGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCC 88295
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| || |||||||| || || |||||||| | || | |||||||||||
Sbjct 88294 TCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 88235
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || || || || | ||||| || || |||||| |||| ||| ||
Sbjct 88234 TGAATCTTGGACTTCAC--AT--TGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGAT 88179
Query 34942 GGTCTTTCCCGTGA 34955
|||||| || ||||
Sbjct 88178 GGTCTTGCCGGTGA 88165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325687477060079
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |