Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20capitalensis_20[genbank_20GCA_5F001604925.1_202016-
03-31] 1,341 sequences; 32,454,403 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq496 172 8e-37
seq546 116 5e-20
>seq496
Length=30664
Score = 172 bits (190), Expect = 8e-37
Identities = 241/330 (73%), Gaps = 16/330 (5%)
Strand=Plus/Plus
Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAA---CAAGCCGTCGACCG 1456508
||||| ||||||||||| ||||||| | | | | |||| |||||| ||| |||
Sbjct 5522 TGCACACCGACTTTGCCTGCCTGCTCTTCTCT---CACATCAAGTCCAAGCCTTCGCCCG 5578
Query 1456509 AC---GTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCG 1456565
| ||| || ||||||| ||||||||||||||| ||| ||||||| | | ||
Sbjct 5579 AGACTGTGG---AGAGGATCATCACCGAGGCCGTCGAGATGGAGCAAGAGTTCCTTACCG 5635
Query 1456566 AGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAA 1456625
| | || || || || || ||||||||||||| ||| ||||||||||||||||| | |
Sbjct 5636 ACGCTCTTCCCGTCGCCCTGCTCGGCATGAACGCTACC-CTCATGTGCCAGTACATCG-A 5693
Query 1456626 TTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCA 1456685
||||| |||||||||||||| | ||| || ||| | ||||| |||| || |||
Sbjct 5694 GTTTGTTGCCGACCGCCTGCTGGTGGCTCTTGGCAAC-AAGAAGTTCTACAACTCGACCA 5752
Query 1456686 ACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCC 1456745
|||| ||| | |||||| || |||||| | |||||||||||||| |||||| |
Sbjct 5753 ACCCCTTCGACTTCATGGAGAACATTTCGCTCAACGGCAAGACCAACTTCTTCGAGAAGC 5812
Query 1456746 GCG-TGGCGAGTACGCCAAGGCCGGCGTCA 1456774
| | ||| || ||| |||||||| ||||
Sbjct 5813 GTGTTGGTGACTACCAAAAGGCCGGTGTCA 5842
>seq546
Length=57559
Score = 116 bits (128), Expect = 5e-20
Identities = 293/445 (66%), Gaps = 16/445 (4%)
Strand=Plus/Minus
Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847
|| ||| |||||| || || |||||| ||||||||| || |||||||| ||| ||
Sbjct 43722 GGTGGCAACAAGCGTCCTGGTGCTTTTGCCATCTACCTGGAGCCTTGGCACGCTGACGTC 43663
Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907
|| || || ||||| ||||||||||| | ||| |||| || ||||||||
Sbjct 43662 TTCCCCTTCCTCGACCTTCGCAAGAACCACGGAA----AGGAGGAGGTCC--GCGCGCGC 43609
Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967
|| |||||||||| |||||| ||| ||||| ||| || ||| | | |
Sbjct 43608 GACCTCTTTTACGCGTTGTGGATTCCCGATCTGTTCATGAAGCGTGTGGAGCAAAACGGT 43549
Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027
|| ||| | ||||||||||| |||||| || || || ||| || |||| |
Sbjct 43548 GAATGGACTCTCTTTTGCCCTCACGAGGCCCCGGGTCTTGCCGACGTGTACGGCGACGAG 43489
Query 262028 TTTGACGCCCTCTA--TGAGNNNNNNNNNNNNNNNNNNNNNNCGCG-GACCGTCGTGCCC 262084
|| || | ||||| ||| |||| ||| ||| | |
Sbjct 43488 TTCGAGGAGCTCTACGAGAGGTACGAAAGGGAAGGCCGTGGTCGCGAGACAGTC---CGC 43432
Query 262085 GCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATG 262144
|| | | || | |||| ||||| ||| ||| || | ||||||||||| |||| |||
Sbjct 43431 GCCCAAAAGCTGTGGTATGCCATCCTCGAGGCTCAGACCGAGACCGGCAATCCCTTTATG 43372
Query 262145 GTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA--CGACAG 262202
|||||||||| || ||||| | ||||||||| ||||||| ||||||| || |||
Sbjct 43371 CTCTACAAGGATGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGCACCATTCG-CAG 43313
Query 262203 AGGCCAACCTGTGCACCGAGATCGT 262227
||||||| ||| |||||| ||
Sbjct 43312 -CTCCAACCTCTGCTGCGAGATTGT 43289
Score = 113 bits (124), Expect = 6e-19
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 259967 TCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAG 260026
|| ||||| || | |||||||||| || |||||||| || || ||||| ||||||
Sbjct 43938 TCATGCTTCTTGATCGACATGAAGGAGGACAGCATCGAGGGTATTTACGACACTCTCAAG 43879
Query 260027 CAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGC 260086
|| || | || |||||| ||||||| || || ||| | || ||| | ||
Sbjct 43878 ACTTGTGCTATGATTTCCAAGACGGCCGGTGGAATTGGTCTCAACGTCCACCGTATTCGT 43819
Query 260087 GCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTT 260146
|| | ||| ||||| | || ||||||||||| ||||||||||| | ||||||||
Sbjct 43818 TCCACAGGCTCCTACATTGCTGGCACCAACGGTACCTCCAACGGCCTGATTCCCATGCTC 43759
Query 260147 CGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181
|| || | ||| |||| || ||||||||||||||
Sbjct 43758 CGAGTCTACAACAACACTGCTCGCTACGTCGACCA 43724
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177681858085242
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |