Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20capitalensis_20[genbank_20GCA_5F001604925.1_202016- 03-31] 1,341 sequences; 32,454,403 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq496 172 8e-37 seq546 116 5e-20 >seq496 Length=30664 Score = 172 bits (190), Expect = 8e-37 Identities = 241/330 (73%), Gaps = 16/330 (5%) Strand=Plus/Plus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAA---CAAGCCGTCGACCG 1456508 ||||| ||||||||||| ||||||| | | | | |||| |||||| ||| ||| Sbjct 5522 TGCACACCGACTTTGCCTGCCTGCTCTTCTCT---CACATCAAGTCCAAGCCTTCGCCCG 5578 Query 1456509 AC---GTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCG 1456565 | ||| || ||||||| ||||||||||||||| ||| ||||||| | | || Sbjct 5579 AGACTGTGG---AGAGGATCATCACCGAGGCCGTCGAGATGGAGCAAGAGTTCCTTACCG 5635 Query 1456566 AGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAA 1456625 | | || || || || || ||||||||||||| ||| ||||||||||||||||| | | Sbjct 5636 ACGCTCTTCCCGTCGCCCTGCTCGGCATGAACGCTACC-CTCATGTGCCAGTACATCG-A 5693 Query 1456626 TTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCA 1456685 ||||| |||||||||||||| | ||| || ||| | ||||| |||| || ||| Sbjct 5694 GTTTGTTGCCGACCGCCTGCTGGTGGCTCTTGGCAAC-AAGAAGTTCTACAACTCGACCA 5752 Query 1456686 ACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCC 1456745 |||| ||| | |||||| || |||||| | |||||||||||||| |||||| | Sbjct 5753 ACCCCTTCGACTTCATGGAGAACATTTCGCTCAACGGCAAGACCAACTTCTTCGAGAAGC 5812 Query 1456746 GCG-TGGCGAGTACGCCAAGGCCGGCGTCA 1456774 | | ||| || ||| |||||||| |||| Sbjct 5813 GTGTTGGTGACTACCAAAAGGCCGGTGTCA 5842 >seq546 Length=57559 Score = 116 bits (128), Expect = 5e-20 Identities = 293/445 (66%), Gaps = 16/445 (4%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| |||||| || || |||||| ||||||||| || |||||||| ||| || Sbjct 43722 GGTGGCAACAAGCGTCCTGGTGCTTTTGCCATCTACCTGGAGCCTTGGCACGCTGACGTC 43663 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || || || ||||| ||||||||||| | ||| |||| || |||||||| Sbjct 43662 TTCCCCTTCCTCGACCTTCGCAAGAACCACGGAA----AGGAGGAGGTCC--GCGCGCGC 43609 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 || |||||||||| |||||| ||| ||||| ||| || ||| | | | Sbjct 43608 GACCTCTTTTACGCGTTGTGGATTCCCGATCTGTTCATGAAGCGTGTGGAGCAAAACGGT 43549 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 || ||| | ||||||||||| |||||| || || || ||| || |||| | Sbjct 43548 GAATGGACTCTCTTTTGCCCTCACGAGGCCCCGGGTCTTGCCGACGTGTACGGCGACGAG 43489 Query 262028 TTTGACGCCCTCTA--TGAGNNNNNNNNNNNNNNNNNNNNNNCGCG-GACCGTCGTGCCC 262084 || || | ||||| ||| |||| ||| ||| | | Sbjct 43488 TTCGAGGAGCTCTACGAGAGGTACGAAAGGGAAGGCCGTGGTCGCGAGACAGTC---CGC 43432 Query 262085 GCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATG 262144 || | | || | |||| ||||| ||| ||| || | ||||||||||| |||| ||| Sbjct 43431 GCCCAAAAGCTGTGGTATGCCATCCTCGAGGCTCAGACCGAGACCGGCAATCCCTTTATG 43372 Query 262145 GTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA--CGACAG 262202 |||||||||| || ||||| | ||||||||| ||||||| ||||||| || ||| Sbjct 43371 CTCTACAAGGATGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGCACCATTCG-CAG 43313 Query 262203 AGGCCAACCTGTGCACCGAGATCGT 262227 ||||||| ||| |||||| || Sbjct 43312 -CTCCAACCTCTGCTGCGAGATTGT 43289 Score = 113 bits (124), Expect = 6e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 259967 TCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAG 260026 || ||||| || | |||||||||| || |||||||| || || ||||| |||||| Sbjct 43938 TCATGCTTCTTGATCGACATGAAGGAGGACAGCATCGAGGGTATTTACGACACTCTCAAG 43879 Query 260027 CAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGC 260086 || || | || |||||| ||||||| || || ||| | || ||| | || Sbjct 43878 ACTTGTGCTATGATTTCCAAGACGGCCGGTGGAATTGGTCTCAACGTCCACCGTATTCGT 43819 Query 260087 GCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTT 260146 || | ||| ||||| | || ||||||||||| ||||||||||| | |||||||| Sbjct 43818 TCCACAGGCTCCTACATTGCTGGCACCAACGGTACCTCCAACGGCCTGATTCCCATGCTC 43759 Query 260147 CGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 || || | ||| |||| || |||||||||||||| Sbjct 43758 CGAGTCTACAACAACACTGCTCGCTACGTCGACCA 43724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177681858085242