Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20capitalensis_20[genbank_20GCA_5F001604925.1_202016-
03-31] 1,341 sequences; 32,454,403 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq731 136 9e-27
seq1119 116 9e-21
seq670 116 9e-21
seq923 113 1e-19
seq546 95.1 3e-14
>seq731
Length=88763
Score = 136 bits (150), Expect = 9e-27
Identities = 143/188 (76%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| |||||||| || || || || |||| ||||| |||| | || | || ||
Sbjct 88354 AGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCC 88295
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| |||||||||||||| || || ||||| || ||||| || ||||||||
Sbjct 88294 TCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 88235
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||||||| ||||||||||| |||| || || || | ||||| |||
Sbjct 88234 TGAATCTTGGACTTCACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTC 88175
Query 225682 TTGCCCGT 225689
||||| ||
Sbjct 88174 TTGCCGGT 88167
Score = 136 bits (150), Expect = 9e-27
Identities = 149/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | |||||| |||||||||||||| || || |||| ||||| |||| | ||
Sbjct 88648 ACGCAGACGCAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGT 88589
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| ||||||||||| || || || ||||| || || || ||
Sbjct 88588 GCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCC 88529
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||||||||||| ||| || ||||||||||| || | || || || |
Sbjct 88528 CTCCTTGTCTTGGATCTTCGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACTTCGAG 88469
Query 225672 CGTGATCGTCTTGCCCGT 225689
||||| |||||||| ||
Sbjct 88468 GGTGATGGTCTTGCCGGT 88451
>seq1119
Length=6527
Score = 116 bits (128), Expect = 9e-21
Identities = 192/274 (70%), Gaps = 5/274 (2%)
Strand=Plus/Minus
Query 7447 TATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAAGG 7506
|||||||| |||| ||||| || | ||||| ||| |||||| || | |||||
Sbjct 5747 TATTTAATCTTTGCATTATTTTCAGGACTAATAGGAACTGCATTTTCAGTGTTAATAAGA 5688
Query 7507 TTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTGAGTGGTAATAGCCAACTTTACAACGT 7565
|||||| || | | || ||| |||| |||||| | |||| ||| | ||||| |
Sbjct 5687 TTAGAACTATCAGGACCAGGTGTTCAATATATTGCA-GATAAT---CAATTATACAATGC 5632
Query 7566 TATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGG 7625
|| || || || || || || | ||||| |||||| | |||||||| | | |||||
Sbjct 5631 CATCATAACAGCCCACGCTATTATGATGATATTCTTTATGGTTATGCCTGCATTAATAGG 5572
Query 7626 CGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAG 7685
|| || || |||| || | || ||| | | || | ||| |||||||| || || ||
Sbjct 5571 AGGATTTGGTAATTTTTTATTACCATTATTAGTCGGAGGTCCGGATATGGCATTCCCTAG 5512
Query 7686 GCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719
|| || ||||||||||| |||||| |||| |||
Sbjct 5511 ACTAAATAATATAAGTTTCTGATTATTACCTCCT 5478
>seq670
Length=49272
Score = 116 bits (128), Expect = 9e-21
Identities = 133/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||| |||| | || | || || || |||||||| || ||||||||
Sbjct 38410 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 38469
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
|| || || ||||| || ||||| || |||||||| |||||||| ||| ||| |||
Sbjct 38470 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 38529
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704
|||||||| |||| || || || | ||||| ||||||||||||| || || | |||
Sbjct 38530 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 38588
>seq923
Length=2568
Score = 113 bits (124), Expect = 1e-19
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || | || || || || || || |||| ||||| || | ||| ||
Sbjct 323 ACGAAGACGGAGCACCAAATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGT 264
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
|| ||||| || |||||||| || |||||||| | || || ||||| ||||| || ||
Sbjct 263 CCTGCCATCCTCGAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGCGGGATGCC 204
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| || ||||| ||| || || || || || || | ||| || || |
Sbjct 203 CTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATCGTATCCGAAGATTCGACCTCGAG 144
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||||||||| || |||| || || | ||| | |||||
Sbjct 143 CGTGATCGTCTTTCCGGTCAGGGTCTTGACGAAGATCTGCAT 102
>seq546
Length=57559
Score = 95.1 bits (104), Expect = 3e-14
Identities = 184/272 (68%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559
||||||||| |||| || | || || ||||||| || ||||| |||| |||
Sbjct 43334 TTCTGGTTGCTCTTGCGGTTGCAAGCATCCTTGTAGAGCATAAAGGGATTGCCGGTCTCG 43393
Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619
| ||||| |||| ||| || ||| || | ||| || |||||| | |
Sbjct 43394 GTCTGAGCCTCGAGGATGGCATACCACAGCTTTTGGGCGCGGACTGTCTCGCGACCACGG 43453
Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679
|||||||| |||||| | ||||| || ||||| || || | ||||| | ||| | |||
Sbjct 43454 CCTTCCCTTTCGTACCTCTCGTAGAGCTCCTCGAACTCGTCGCCGTACACGTCGGCAAGA 43513
Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739
|| || || || | |||||||||||| |||| || || | ||||| | |||||||
Sbjct 43514 CCCGGGGCCTCGTGAGGGCAAAAGAGAGTCCATTCACCGTTTTGCTCCACACGCTTCATG 43573
Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771
|| || || | |||| | ||||| || ||
Sbjct 43574 AACAGATCGGGAATCCACAACGCGTAAAAGAG 43605
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192510710450654
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |