Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20capitalensis_20[genbank_20GCA_5F001604925.1_202016-
03-31] 1,341 sequences; 32,454,403 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq838 107 2e-18
>seq838
Length=49465
Score = 107 bits (118), Expect = 2e-18
Identities = 133/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 29624 GGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCT 29683
||||| | ||| | ||| | | |||| | ||||| ||||| ||||||||||| || ||
Sbjct 13655 GGCTCGCGCTCCAACTGCACCTTCAGGGCCTCCACATGGTCGAGGTAGACGTGGGCGTCG 13596
Query 29684 CCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG 29743
|||| |||||| | | || || | || || |||||| |||| ||| | |||
Sbjct 13595 CCCATGGTGTGCGTTAGCGAGCCGGGCACCAGGTCGCAGACGTGCGCCAGCATATGCGTC 13536
Query 29744 AGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGG 29803
|| || | ||||||||| ||||| || ||||| |||||||||||||| | |||| |||
Sbjct 13535 AGCAGCGCGTAGCTGGCAATGTTGAAAGGCACGCCGAGCCCCATGTCGCAGGACCGTTGG 13476
Query 29804 TA 29805
||
Sbjct 13475 TA 13474
Score = 95.1 bits (104), Expect = 1e-14
Identities = 152/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076
||||||| ||| ||||| ||||| || ||||| ||||| |||||||| | ||| || ||
Sbjct 13214 AAATGCCGCCATTGGAATCCGTAAACTGGTCCAAGGTCGCCCTCTTCGCGGTG-TCCCAG 13156
Query 30077 CCCCTCT-TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135
|| | |||||| ||| |||| || |||||| |||||||||| || | || ||
Sbjct 13155 TCCGACGCTGTCCAGAAACTCTCGAGACCCGTTGCCGTCCCAGATTTTGATTCCTGCATC 13096
Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30195
|| ||| || ||| ||| || | ||||||||||||||| | | ||||||
Sbjct 13095 TGACAGCGGCTTCGAGGACGTGCTGCCCGAAATGAACCACAGCAGCTCGGCAATGACGGC 13036
Query 30196 CTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30231
| ||| || | |||||| ||||| || || ||
Sbjct 13035 GCGCAGAAATACGCGCTTGGTGGTGAGAAGCGGCAA 13000
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406156561897126
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |