Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1666 264 1e-65 seq3589 145 8e-30 seq2177 138 1e-27 seq2758 125 7e-24 >seq1666 Length=59928 Score = 264 bits (292), Expect = 1e-65 Identities = 565/840 (67%), Gaps = 62/840 (7%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| ||||||||||||| ||||||| | || ||| Sbjct 56096 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCCGAGGAGATTGATCTG 56037 Query 116696 TCCAAGGA-CACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | ||| |||||||| |||||||| |||||| Sbjct 56036 TCCAAGGATCTCCA-CGACTGGAACAAGCGTCTGAACGACGACGAGCGCTTCTTCATCTC 55978 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||||| || ||||| || ||||| || ||||| ||||||||||| |||||||||| Sbjct 55977 CCACGTTCTCGCCTTCTTTGCCGCGTCTGATGGCATTGTCAACGAGAACTTGGTCGAGCG 55918 Query 116812 TTTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 ||| |||| | || ||||| | ||||||| || ||||||||||| || ||||| | Sbjct 55917 CTTCAGCTCCGAAG-TGCAGATTCCCGAGGCTCGCTGCTTCTACGGTTTCCAGATTATGA 55859 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT--GCGCTCTTC 116928 |||||||| | |||||||| | || ||| | | |||||||||||| | ||| | Sbjct 55858 TGGAGAACATCCACTCGGAGACATACTCGCTCTTGATCGACACGTACATCAGCGAGCCCA 55799 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGA------GACG----ATGC-CGT----- 116972 | | | | || | | || |||||||| || ||| |||| ||| Sbjct 55798 AGCAGCGCAACTAC--CTCTTCAACGCCATTGACAATAGTACGTGACATGCACGTAGCGC 55741 Query 116973 ------------------GCGTCAAAG------------AGAA---GGCCGAGTGGGCGC 116999 |||||| || |||| |||||| ||||| | Sbjct 55740 TCTACCCGTCTTGCTGACGCGTCATAGTTCCCTGCATCAAGAAGAAGGCCGACTGGGCTC 55681 Query 117000 TGCGCTGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCC 117058 ||||||||||| || || ||| || |||| | ||| || | ||||| || ||| Sbjct 55680 TGCGCTGGATCTGCGACA-AGAACTCGACCTTTGCATCGCGTCTCATCGCCTTTGCTGCC 55622 Query 117059 GTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGC 117118 |||||||| ||||||| ||| ||||| |||| || ||||||||||| || || Sbjct 55621 GTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCGTCCATCTTCTGGCTCAAGAAGCGTGGT 55562 Query 117119 CTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGC 117178 || ||||| || ||||| ||| ||||||||||||||| | |||||||| |||| | Sbjct 55561 CTGATGCCTGGTCTGACATTCTCCAACGAGCTCATCTCTCGCGACGAGGGCATGCACACC 55502 Query 117179 GACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGG 117238 ||||||||||| |||| ||| || | | | |||| | | | | || | Sbjct 55501 GACTTTGCCTGCCTGCTCTTCTCTCACATCAAGTCGAAGCCGACCCCCGAGGCTGTTGAG 55442 Query 117239 GAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTG 117298 ||||| | ||| || |||| || ||||| ||||| || || || || || || Sbjct 55441 AAGATCATTGTCGAGGCCGTCGAGATTGAGCAAGAGTTCCTGACTGACGCTCTCCCCGTT 55382 Query 117299 CGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGG 117358 |||||| || | || | |||| || ||||| ||||| || || ||| | Sbjct 55381 GCTCTGCTCGGCATGAACGCTGGCCTCATGTGCCAGTACATTGAGTTTGTTGCTGACCGC 55322 Query 117359 CTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATG 117418 |||||| | | ||| | | | |||||||||||| | ||||||| | ||||| ||| Sbjct 55321 CTGCTGGTGGCGCTTGGCAACAAGAAGCACTACAACTCTACCAACCCCTTCGACTTCATG 55262 >seq3589 Length=6346 Score = 145 bits (160), Expect = 8e-30 Identities = 158/206 (77%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| ||||||||| | || ||||| || |||||| | | | |||| ||||| Sbjct 3922 TCACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAACG-TCAAG 3864 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| |||||||||||| | ||| |||| || ||||||| ||| ||| Sbjct 3863 TCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC-AGCAGCGTCTCATCTTCGCTGGC 3805 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || || | ||||||||| |||||||||||||||||||||| | ||||| Sbjct 3804 AAGCAGCTTGAGGATGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCGACGCTT 3745 Query 40891 CATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || | ||| || | ||||| Sbjct 3744 CACCTCGTCCTTCGCCTGCGTGGCGG 3719 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771 |||| ||||| ||||||||| |||| |||||| | |||||| | | | | ||||| Sbjct 3644 TCACTGGCAAGACCATCACCCTCGAAGTCGAATCGTCCGACACCATCGACAATGTCAAGT 3585 Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 || |||| || || ||||||||||| | |||||||| || | |||| ||| |||| Sbjct 3584 CCAAGATTCAGGATAAGGAGGGCATCCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCA 3525 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891 | || || || |||| |||||||| |||||||||||| |||||||| |||| || | Sbjct 3524 AGCAACTCGAGGACGGTCGCACCCTTGCCGACTACAACATTCAGAAGGAATCCACCCTCC 3465 Query 40892 A 40892 | Sbjct 3464 A 3464 Score = 104 bits (114), Expect = 2e-17 Identities = 103/132 (78%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| ||||| || |||| ||||| |||||||| ||| |||||||||| || || || Sbjct 3138 AACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGAT 3080 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 | ||||||||| ||||| || || | || || | ||||||||||||||||||||| Sbjct 3079 TTTCGCGGGCAAGCAGCTTGAGGATGGCCGGACGTTGGCCGACTACAACATCCAGAAGGA 3020 Query 40881 GGCCACGCTGCA 40892 | |||| ||||| Sbjct 3019 GTCCACTCTGCA 3008 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||| || | || ||||| | | Sbjct 3438 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACCATTACGCTTGAAGTCGAGTCGTCA 3379 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| ||||| || || | ||||| ||||| ||||| | || || Sbjct 3378 GACACGATTGACAACG-TCAAGTCGAAGATCCAAGACAAGGAGGGTATCCCGCCCGATCA 3320 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | || ||||| ||||| || |||| | || | |||||||| Sbjct 3319 GCAGCGCCTGATTTTTGCAGGCAAGCAGCTCGAGGACGGCAGAACGTTGGCAGACTACAA 3260 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| |||||| | || ||||| Sbjct 3259 CATCCAAAAGGAGTCAACCCTGCA 3236 >seq2177 Length=34801 Score = 138 bits (152), Expect = 1e-27 Identities = 139/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| |||| || || || | |||| | | Sbjct 6024 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGACACCATC 6083 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| |||||||||| || || Sbjct 6084 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 6143 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || |||| ||||||||| ||||||||||||||||||| Sbjct 6144 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 6203 Query 40879 G 40879 | Sbjct 6204 G 6204 >seq2758 Length=2532 Score = 125 bits (138), Expect = 7e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| | |||||||| || || |||| ||| ||||| ||||| || Sbjct 1556 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 1615 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||| || |||||||||||||||||||||| | ||||| || || ||| || Sbjct 1616 GACGGCCGCACGCTGTCCGACTACAACATCCAGAAGGAGTCGACGCTCCACCTGGTGCTG 1675 Query 40903 CGCTTGAGGGGCGG 40916 ||| || | ||||| Sbjct 1676 CGCCTGCGCGGCGG 1689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515182181500480