Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq1666 264 1e-65
seq3589 145 8e-30
seq2177 138 1e-27
seq2758 125 7e-24
>seq1666
Length=59928
Score = 264 bits (292), Expect = 1e-65
Identities = 565/840 (67%), Gaps = 62/840 (7%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| ||||||||||||| ||||||| | || |||
Sbjct 56096 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCCGAGGAGATTGATCTG 56037
Query 116696 TCCAAGGA-CACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAA 116751
|||||||| | | | ||||||| | ||| |||||||| |||||||| ||||||
Sbjct 56036 TCCAAGGATCTCCA-CGACTGGAACAAGCGTCTGAACGACGACGAGCGCTTCTTCATCTC 55978
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||||| || ||||| || ||||| || ||||| ||||||||||| ||||||||||
Sbjct 55977 CCACGTTCTCGCCTTCTTTGCCGCGTCTGATGGCATTGTCAACGAGAACTTGGTCGAGCG 55918
Query 116812 TTTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870
||| |||| | || ||||| | ||||||| || ||||||||||| || ||||| |
Sbjct 55917 CTTCAGCTCCGAAG-TGCAGATTCCCGAGGCTCGCTGCTTCTACGGTTTCCAGATTATGA 55859
Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT--GCGCTCTTC 116928
|||||||| | |||||||| | || ||| | | |||||||||||| | ||| |
Sbjct 55858 TGGAGAACATCCACTCGGAGACATACTCGCTCTTGATCGACACGTACATCAGCGAGCCCA 55799
Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGA------GACG----ATGC-CGT----- 116972
| | | | || | | || |||||||| || ||| |||| |||
Sbjct 55798 AGCAGCGCAACTAC--CTCTTCAACGCCATTGACAATAGTACGTGACATGCACGTAGCGC 55741
Query 116973 ------------------GCGTCAAAG------------AGAA---GGCCGAGTGGGCGC 116999
|||||| || |||| |||||| ||||| |
Sbjct 55740 TCTACCCGTCTTGCTGACGCGTCATAGTTCCCTGCATCAAGAAGAAGGCCGACTGGGCTC 55681
Query 117000 TGCGCTGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCC 117058
||||||||||| || || ||| || |||| | ||| || | ||||| || |||
Sbjct 55680 TGCGCTGGATCTGCGACA-AGAACTCGACCTTTGCATCGCGTCTCATCGCCTTTGCTGCC 55622
Query 117059 GTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGC 117118
|||||||| ||||||| ||| ||||| |||| || ||||||||||| || ||
Sbjct 55621 GTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCGTCCATCTTCTGGCTCAAGAAGCGTGGT 55562
Query 117119 CTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGC 117178
|| ||||| || ||||| ||| ||||||||||||||| | |||||||| |||| |
Sbjct 55561 CTGATGCCTGGTCTGACATTCTCCAACGAGCTCATCTCTCGCGACGAGGGCATGCACACC 55502
Query 117179 GACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGG 117238
||||||||||| |||| ||| || | | | |||| | | | | || |
Sbjct 55501 GACTTTGCCTGCCTGCTCTTCTCTCACATCAAGTCGAAGCCGACCCCCGAGGCTGTTGAG 55442
Query 117239 GAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTG 117298
||||| | ||| || |||| || ||||| ||||| || || || || || ||
Sbjct 55441 AAGATCATTGTCGAGGCCGTCGAGATTGAGCAAGAGTTCCTGACTGACGCTCTCCCCGTT 55382
Query 117299 CGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGG 117358
|||||| || | || | |||| || ||||| ||||| || || ||| |
Sbjct 55381 GCTCTGCTCGGCATGAACGCTGGCCTCATGTGCCAGTACATTGAGTTTGTTGCTGACCGC 55322
Query 117359 CTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATG 117418
|||||| | | ||| | | | |||||||||||| | ||||||| | ||||| |||
Sbjct 55321 CTGCTGGTGGCGCTTGGCAACAAGAAGCACTACAACTCTACCAACCCCTTCGACTTCATG 55262
>seq3589
Length=6346
Score = 145 bits (160), Expect = 8e-30
Identities = 158/206 (77%), Gaps = 3/206 (1%)
Strand=Plus/Minus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770
|||| ||||| ||||||||| | || ||||| || |||||| | | | |||| |||||
Sbjct 3922 TCACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAACG-TCAAG 3864
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
|| || | ||||| |||||||||||| | ||| |||| || ||||||| ||| |||
Sbjct 3863 TCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC-AGCAGCGTCTCATCTTCGCTGGC 3805
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
|| ||||| || || | ||||||||| |||||||||||||||||||||| | |||||
Sbjct 3804 AAGCAGCTTGAGGATGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCGACGCTT 3745
Query 40891 CATCTAGTGTTGCGCTTGAGGGGCGG 40916
|| || || | ||| || | |||||
Sbjct 3744 CACCTCGTCCTTCGCCTGCGTGGCGG 3719
Score = 120 bits (132), Expect = 3e-22
Identities = 135/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771
|||| ||||| ||||||||| |||| |||||| | |||||| | | | | |||||
Sbjct 3644 TCACTGGCAAGACCATCACCCTCGAAGTCGAATCGTCCGACACCATCGACAATGTCAAGT 3585
Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831
|| |||| || || ||||||||||| | |||||||| || | |||| ||| ||||
Sbjct 3584 CCAAGATTCAGGATAAGGAGGGCATCCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCA 3525
Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891
| || || || |||| |||||||| |||||||||||| |||||||| |||| || |
Sbjct 3524 AGCAACTCGAGGACGGTCGCACCCTTGCCGACTACAACATTCAGAAGGAATCCACCCTCC 3465
Query 40892 A 40892
|
Sbjct 3464 A 3464
Score = 104 bits (114), Expect = 2e-17
Identities = 103/132 (78%), Gaps = 1/132 (1%)
Strand=Plus/Minus
Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820
|||| ||||| || |||| ||||| |||||||| ||| |||||||||| || || ||
Sbjct 3138 AACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGAT 3080
Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880
| ||||||||| ||||| || || | || || | |||||||||||||||||||||
Sbjct 3079 TTTCGCGGGCAAGCAGCTTGAGGATGGCCGGACGTTGGCCGACTACAACATCCAGAAGGA 3020
Query 40881 GGCCACGCTGCA 40892
| |||| |||||
Sbjct 3019 GTCCACTCTGCA 3008
Score = 82.4 bits (90), Expect = 8e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || ||||| ||||| || | || ||||| | |
Sbjct 3438 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACCATTACGCTTGAAGTCGAGTCGTCA 3379
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | || |||| ||||| || || | ||||| ||||| ||||| | || ||
Sbjct 3378 GACACGATTGACAACG-TCAAGTCGAAGATCCAAGACAAGGAGGGTATCCCGCCCGATCA 3320
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || || | || ||||| ||||| || |||| | || | ||||||||
Sbjct 3319 GCAGCGCCTGATTTTTGCAGGCAAGCAGCTCGAGGACGGCAGAACGTTGGCAGACTACAA 3260
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
|||||| |||||| | || |||||
Sbjct 3259 CATCCAAAAGGAGTCAACCCTGCA 3236
>seq2177
Length=34801
Score = 138 bits (152), Expect = 1e-27
Identities = 139/181 (77%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || |||||||| ||||||||| |||| || || || | |||| | |
Sbjct 6024 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGACACCATC 6083
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||| ||| |||||||||| || ||
Sbjct 6084 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 6143
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| ||||| || |||| ||||||||| |||||||||||||||||||
Sbjct 6144 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 6203
Query 40879 G 40879
|
Sbjct 6204 G 6204
>seq2758
Length=2532
Score = 125 bits (138), Expect = 7e-24
Identities = 108/134 (81%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| |||||||||||| | |||||||| || || |||| ||| ||||| ||||| ||
Sbjct 1556 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 1615
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|||| ||||| || |||||||||||||||||||||| | ||||| || || ||| ||
Sbjct 1616 GACGGCCGCACGCTGTCCGACTACAACATCCAGAAGGAGTCGACGCTCCACCTGGTGCTG 1675
Query 40903 CGCTTGAGGGGCGG 40916
||| || | |||||
Sbjct 1676 CGCCTGCGCGGCGG 1689
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515182181500480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |