Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq3589 122 6e-23 seq2758 120 2e-22 seq2177 95.1 8e-15 >seq3589 Length=6346 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||||| ||| | ||| || ||||| ||||||||||||| | Sbjct 2984 CCACCGCGGAGACGGAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCC 3043 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | ||| | || || | ||||||||| |||||||| || ||||||||||| ||| Sbjct 3044 AACGTCCGGCCATCCTCAAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 3103 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | |||| ||| | || || || Sbjct 3104 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATCGTATCCGAAGACTCCACC 3163 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||| || || |||||||| | || || || ||||||||||| Sbjct 3164 TCAAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3210 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || || || || ||||||||||| | || | | | |||| Sbjct 3227 AGCACCAAGTGCAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCCAACGTTCTGCCGTCC 3286 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||||||||| ||||| || |||||||| ||| || | | ||||||||| Sbjct 3287 TCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGATCGGGCGGGATACCCTCCTTGTCT 3346 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | |||| || | ||| ||||| || | ||| ||||| Sbjct 3347 TGGATCTTCGACTTGACGTTGTCAATCGTGTCTGACGACTCGACTTCAAGCGTAATGGTC 3406 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| | ||| || || ||||||||||| Sbjct 3407 TTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3438 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||||| ||| | || ||| ||||| ||||||||||||| Sbjct 3440 CCACCGCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGCA 3499 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || || |||| || | |||||||| ||||| || | ||||||||||| | |||| Sbjct 3500 AGGGTGCGACCGTCCTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGG 3559 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||| || ||||| ||| | || | | || | |||| ||||||||| Sbjct 3560 -ATGCCCTCCTTATCCTGAATCTTGGACTTGACATTGTCGATGGTGTCGGACGATTCGAC 3618 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGA 34367 || | |||||||| ||||| |||| Sbjct 3619 TTCGAGGGTGATGGTCTTGCCAGTGA 3644 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | || || ||||| | || || ||||| ||||||||||||| Sbjct 3719 CCGCCACGCAGGCGAAGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 3778 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| ||||| ||||| ||||||| ||| ||| Sbjct 3779 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCT-GTCAGGGGGG 3837 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | || | |||| || ||||| Sbjct 3838 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGACC 3897 Query 34343 TCCACCGTGATGGTTTTGCCGGTGA 34367 || | |||||||| ||||| |||| Sbjct 3898 TCAAGGGTGATGGTCTTGCCAGTGA 3922 >seq2758 Length=2532 Score = 120 bits (132), Expect = 2e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | |||||||||||| | || || ||||| ||||||||||||||| Sbjct 1689 CCGCCGCGCAGGCGCAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1630 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| || | ||||||||| ||||| || || |||||||||||| ||| Sbjct 1629 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 1570 Query 34283 ACGCTCTCCTTGTC 34296 | || ||||||||| Sbjct 1569 ATGCCCTCCTTGTC 1556 >seq2177 Length=34801 Score = 95.1 bits (104), Expect = 8e-15 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| |||||||||||||| || ||| |||| || | ||||||||| ||||| || Sbjct 6202 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6143 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 || ||||||||||| ||| | || ||||||||| ||||| ||| | || | | Sbjct 6142 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 6083 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 || | || | || || || || | |||||||| ||||| || || || || || ||| Sbjct 6082 ATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAG 6023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323049367594880