Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5249 338 6e-88 seq1666 158 1e-33 seq2177 89.7 5e-13 seq3589 82.4 7e-11 >seq5249 Length=10599 Score = 338 bits (374), Expect = 6e-88 Identities = 654/956 (68%), Gaps = 12/956 (1%) Strand=Plus/Minus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 ||||| | ||||| || || |||||||| || |||||||| ||||| || || Sbjct 8081 GAGGCCAAGTTGCAGACAGCAACCTCGTCGGGGGCAGTGTACTCGACAATCTCACAGCAC 8022 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || ||| | || || |||| || | |||||||| || || ||||| | ||| Sbjct 8021 AGGTTGGAGCTGCGAATGGTACCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAAGCGTCC 7962 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 |||||||||||| | || |||| |||||| ||| | ||| | || || ||||| Sbjct 7961 TTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCCAAAATGGCGTACCACAGC 7902 Query 23207 GTCTGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGC 23265 |||| ||| | | | ||| |||| | | |||||| ||||||| | | |||| | | Sbjct 7901 TTCTGGGCGCGGATA-GTCTCACGACCACGGCCTTCCCTCTCGTACCTCTCATACAGCTC 7843 Query 23266 GTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGAC 23324 ||||| ||| | ||||| ||| ||||| || || || | | || ||||||||| Sbjct 7842 CTCAAACTCGTCGCCGTAGACA-TCGGCGAGACCCGGGGCCTCGTGAGGGCACATGAGAG 7784 Query 23325 TCCACATTGA-GTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAG 23383 |||| || | || | || || || |||| || ||||| || | ||| || |||||| Sbjct 7783 TCCA-ATCGCCGTTTTGCTCGACACGCTTCATGAACAGATCAGGAACCCACAGGGCGTAG 7725 Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443 |||| ||||| ||||| ||||| || || ||| |||||| | || | ||| Sbjct 7724 AACAAGTCGCGTGCGCGGACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCGAGGAAGGGG 7665 Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503 || ||||| || ||||| ||||| ||||| | |||||| || || || | ||| ||||| Sbjct 7664 AAGACGTCGGCGTGCCAAGGCTCCAGGTAGATGGCAAAAGCACCAGGGCGCTTGTTGCCA 7605 Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563 ||||| || ||||| || || ||||||||||| || | ||||| || | || |||||| Sbjct 7604 CCCTGGTCAACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGGAATCAGGCCGTTG 7545 Query 23564 GACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAA 23623 || | |||| || || | || || ||| || | | ||| |||| || | Sbjct 7544 GAGGTGCCGTTGGTACCAGCAATGTAGGAGCCAGTTGAACGGATGCGGTGGACGTTGAGA 7485 Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683 || || || ||| ||| || || ||||| || || || || ||||||||||||||| Sbjct 7484 CCGATTCCACCGGCCGTCTTGGAAATCATGGCACAAGTCTTGAGGGTGTCGTAGATGCCC 7425 Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTA 23743 |||||||||||||| || | ||| |||||| || || | | || | ||||| ||| Sbjct 7424 TCGATGCTGTCCTCCTTCATGTCGATCAAGAAGCATGATGCAAGCTGGGGCTTGGGGGTA 7365 Query 23744 GCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTAC 23803 | || ||||| || || ||||| |||||||| | ||||| | |||||| Sbjct 7364 CCAGCGTTGAACAAGGTGGGAGAAGCGTGGGTAAAGTACTTTTGAGACATCAAGTTGTAC 7305 Query 23804 GTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATG 23863 || || ||||| ||||||| ||| ||||| || || | ||||| ||||| |||||| Sbjct 7304 GTTTCAATGGCCTTTTCAATGTTCTCGCCGTGGATTCCAACAGCGACACGCATAATCATG 7245 Query 23864 TATTGAGGTCTCTCG---ACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATC 23920 | || ||||| ||| ||| | ||| | || || || ||||| | | | | Sbjct 7244 TGCTGTGGTCTTTCGGCAACCTT---GCCATCGATGCGGAGCAAGTATGACCTCTCGAGC 7188 Query 23921 GTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 || || || ||||| || | ||||| ||||| || |||| || |||||||| || Sbjct 7187 GTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCCGAGTT 7132 Score = 104 bits (114), Expect = 2e-17 Identities = 371/569 (65%), Gaps = 17/569 (3%) Strand=Plus/Minus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 ||||| || || |||||||||||||||||||| | |||||| | ||| || || || Sbjct 8962 GTGCGCAGGTAGTACATGCCCGTCTTCAGACCAAGCTTCCAGCCAGCAAAGTGCATGGAA 8903 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || | ||| | ||||| | |||| ||| ||| ||| |||||| Sbjct 8902 GTGATCTTGCCCATCGTAGGCTCCTTCATGTGGATGTTGAGCGATTGAGACTGGTCGATA 8843 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTA-CGCATCGACATTTCCCATACGGT 22323 || || || || ||||| ||||| | | | |||| ||| || || ||||| || || Sbjct 8842 AAGGCACCACGGTCGGCAGCCATCTGGA-CGATGTTGCGCTGAGAAATCTCCCACACAGT 8784 Query 22324 CTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACG-GACCCGTTAT 22382 |||||| || | |||| || || || | | || | | || || || || Sbjct 8783 CTTGTAGAGGGCCTTGATGTCGTCGGGGAT-GTTGGGAATTTGTTGAATAGAGCCATTGG 8725 Query 22383 TGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGA 22442 ||||| || || || | || ||||| ||| ||| || | || || | Sbjct 8724 ACGCGATGATGCGGTTCTTCATGTTGTCCGACCACAGACCCATGTCGACAAGGTCCTTAA 8665 Query 22443 CCAG--ATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTT 22500 || ||| |||| || ||||| ||||| || | | || || || ||||||||| Sbjct 8664 GCAACCATG--GGTTGACAACTTGGAACTCACCAGCGAGCACACGACGCGAGTAAATGTT 8607 Query 22501 GGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGG 22560 ||| ||| | || || ||| | || ||| || || || || ||||| || || || Sbjct 8606 GGAGGTGTAGGGCTCAAAACACTCGTTGAAGCCAAGGATTTGGCTAGTCGAGGCAGTAGG 8547 Query 22561 CATCGGCGCCAACAGTAGCGA---GTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAG 22617 ||| || | ||||| ||| | ||| | || |||||| | ||| | | |||||| Sbjct 8546 CATGGGAG-CAACA--AGCAAGCTGTTGCGCACGCCGTGTAGAGCAATCTCGCCCTTGAG 8490 Query 22618 CATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACAC 22677 | ||||||||| || || | |||||| |||| |||||| ||||||||||| | Sbjct 8489 AGCCTCCCAGTCCCAGAGGTCTGTGGGCGTC---TTGTTCCACATGTCGTATTGCAAGAT 8433 Query 22678 GCCGCGACTCGCCGGGCTGCCTTCGTACG 22706 ||| || ||||| |||||||||| Sbjct 8432 GCCCTGAGAGGCCGGCGAACCTTCGTACG 8404 >seq1666 Length=59928 Score = 158 bits (174), Expect = 1e-33 Identities = 306/446 (69%), Gaps = 12/446 (3%) Strand=Plus/Minus Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || ||||| || || |||||||| ||||| ||||| ||| ||| ||| | || || Sbjct 55639 CTCATCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCGTCCATCTTC 55580 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||| || || |||||||| || ||||| || ||||||| | || || ||| Sbjct 55579 TGGCTCAAGAAGCGTGGTCTGATGCCTGGTCTGACATTCTCCAACGAGCTCATCTCTCGC 55520 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACAT--TGTCAATAAAC 58152 |||||||| | || || || ||||| ||||| | | ||||||||| ||| || | Sbjct 55519 GACGAGGGCATGCACACCGACTTTGCCTGCCTGCTCTTCTCTCACATCAAGTC--GAAGC 55462 Query 58153 CGACGCGGGATCGCATCTT--GGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTT 58210 |||| | || | | || | | || || |||||| |||| ||| || | ||||| Sbjct 55461 CGACCCCCGA--GGCTGTTGAGAAGATCATTGTCGAGGCCGTCGAGATTGAGCAAGAGTT 55404 Query 58211 TGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTA 58270 | || || || || || || || ||||||| |||||| || | |||| |||| Sbjct 55403 CCTGACTGACGCTCTCCCCGTTGCTCTGCTCGGCATGAACGCTGGCCTCATGTGCCAGTA 55344 Query 58271 CATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGA--GAGCGTCATTACAAC 58328 ||||||||||||||| ||| | || || | | || | | | || || |||||| Sbjct 55343 CATTGAGTTTGTTGCTGACCGCCTGCTGGTGGCGCT--TGGCAACAAGAAGCACTACAAC 55286 Query 58329 ACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTC 58388 | | || || || || || ||| | || |||||| | |||||||| ||||| ||| Sbjct 55285 TCTACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAACGGCAAGACCAACTTCTTC 55226 Query 58389 GaaaaaaaaGTTAGCGAATATCAAAA 58414 || || ||| | || |||||||| Sbjct 55225 GAGAAGCGCGTTGGTGACTATCAAAA 55200 >seq2177 Length=34801 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| ||||| ||||| ||||| || |||||| |||| ||||| | || |||| || Sbjct 6024 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGACACCATC 6083 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 || | ||||| | || ||||||||| ||| | || || ||||||||||| || Sbjct 6084 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 6143 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGAC 31348 || ||||| ||||| ||| | || ||| Sbjct 6144 ATCTTCGCCGGCAAGCAGCTCGAGGAC 6170 >seq3589 Length=6346 Score = 82.4 bits (90), Expect = 7e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276 || ||||| || |||||| |||| || ||| ||||||||| |||| | ||||| Sbjct 3642 ACTGGCAAGACCATCACCCTCGAAGTCGAATCGTCCGACACCATCGACAATGTCAAGTCC 3583 Query 31277 AGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAA 31336 | || ||| ||||| ||| | ||||| ||||||||||| | || ||||| ||||| Sbjct 3582 AAGATTCAGGATAAGGAGGGCATCCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAG 3523 Query 31337 CAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCAT 31396 || | || ||| | || | ||| || |||||||| || ||||| || || || Sbjct 3522 CAACTCGAGGACGGTCGCACCCTTGCCGACTACAACATTCAGAAGGAATCCACCCTCCAC 3463 Query 31397 CTGGTACT 31404 |||| || Sbjct 3462 TTGGTGCT 3455 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/205 (69%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276 || ||||| || |||||| | || || || | ||||||| |||| | ||||| Sbjct 3920 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAACGTCAAGTCC 3861 Query 31277 AGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAA 31336 | || ||||||||| ||| | || || ||| |||||||||| || ||||||||||| Sbjct 3860 AAGATCCAGGACAAGGAGGGCATCCCCCCTGAC-AGCAGCGTCTCATCTTCGCTGGCAAG 3802 Query 31337 CAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCAT 31396 ||| | || || || | ||| || ||||| || || || ||||| ||||| Sbjct 3801 CAGCTTGAGGATGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCGACGCTTCAC 3742 Query 31397 CTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||| | ||| | ||||||| Sbjct 3741 CTCGTCCTTCGCCTGCGTGGCGGTA 3717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445734371684160