Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq5249 338 6e-88
seq1666 158 1e-33
seq2177 89.7 5e-13
seq3589 82.4 7e-11
>seq5249
Length=10599
Score = 338 bits (374), Expect = 6e-88
Identities = 654/956 (68%), Gaps = 12/956 (1%)
Strand=Plus/Minus
Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086
||||| | ||||| || || |||||||| || |||||||| ||||| || ||
Sbjct 8081 GAGGCCAAGTTGCAGACAGCAACCTCGTCGGGGGCAGTGTACTCGACAATCTCACAGCAC 8022
Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146
|| ||| | || || |||| || | |||||||| || || ||||| | |||
Sbjct 8021 AGGTTGGAGCTGCGAATGGTACCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAAGCGTCC 7962
Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206
|||||||||||| | || |||| |||||| ||| | ||| | || || |||||
Sbjct 7961 TTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCCAAAATGGCGTACCACAGC 7902
Query 23207 GTCTGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGC 23265
|||| ||| | | | ||| |||| | | |||||| ||||||| | | |||| | |
Sbjct 7901 TTCTGGGCGCGGATA-GTCTCACGACCACGGCCTTCCCTCTCGTACCTCTCATACAGCTC 7843
Query 23266 GTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGAC 23324
||||| ||| | ||||| ||| ||||| || || || | | || |||||||||
Sbjct 7842 CTCAAACTCGTCGCCGTAGACA-TCGGCGAGACCCGGGGCCTCGTGAGGGCACATGAGAG 7784
Query 23325 TCCACATTGA-GTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAG 23383
|||| || | || | || || || |||| || ||||| || | ||| || ||||||
Sbjct 7783 TCCA-ATCGCCGTTTTGCTCGACACGCTTCATGAACAGATCAGGAACCCACAGGGCGTAG 7725
Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443
|||| ||||| ||||| ||||| || || ||| |||||| | || | |||
Sbjct 7724 AACAAGTCGCGTGCGCGGACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCGAGGAAGGGG 7665
Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503
|| ||||| || ||||| ||||| ||||| | |||||| || || || | ||| |||||
Sbjct 7664 AAGACGTCGGCGTGCCAAGGCTCCAGGTAGATGGCAAAAGCACCAGGGCGCTTGTTGCCA 7605
Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563
||||| || ||||| || || ||||||||||| || | ||||| || | || ||||||
Sbjct 7604 CCCTGGTCAACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGGAATCAGGCCGTTG 7545
Query 23564 GACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAA 23623
|| | |||| || || | || || ||| || | | ||| |||| || |
Sbjct 7544 GAGGTGCCGTTGGTACCAGCAATGTAGGAGCCAGTTGAACGGATGCGGTGGACGTTGAGA 7485
Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683
|| || || ||| ||| || || ||||| || || || || |||||||||||||||
Sbjct 7484 CCGATTCCACCGGCCGTCTTGGAAATCATGGCACAAGTCTTGAGGGTGTCGTAGATGCCC 7425
Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTA 23743
|||||||||||||| || | ||| |||||| || || | | || | ||||| |||
Sbjct 7424 TCGATGCTGTCCTCCTTCATGTCGATCAAGAAGCATGATGCAAGCTGGGGCTTGGGGGTA 7365
Query 23744 GCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTAC 23803
| || ||||| || || ||||| |||||||| | ||||| | ||||||
Sbjct 7364 CCAGCGTTGAACAAGGTGGGAGAAGCGTGGGTAAAGTACTTTTGAGACATCAAGTTGTAC 7305
Query 23804 GTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATG 23863
|| || ||||| ||||||| ||| ||||| || || | ||||| ||||| ||||||
Sbjct 7304 GTTTCAATGGCCTTTTCAATGTTCTCGCCGTGGATTCCAACAGCGACACGCATAATCATG 7245
Query 23864 TATTGAGGTCTCTCG---ACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATC 23920
| || ||||| ||| ||| | ||| | || || || ||||| | | | |
Sbjct 7244 TGCTGTGGTCTTTCGGCAACCTT---GCCATCGATGCGGAGCAAGTATGACCTCTCGAGC 7188
Query 23921 GTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976
|| || || ||||| || | ||||| ||||| || |||| || |||||||| ||
Sbjct 7187 GTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCCGAGTT 7132
Score = 104 bits (114), Expect = 2e-17
Identities = 371/569 (65%), Gaps = 17/569 (3%)
Strand=Plus/Minus
Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204
||||| || || |||||||||||||||||||| | |||||| | ||| || || ||
Sbjct 8962 GTGCGCAGGTAGTACATGCCCGTCTTCAGACCAAGCTTCCAGCCAGCAAAGTGCATGGAA 8903
Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264
|| | || || | ||| | ||||| | |||| ||| ||| ||| ||||||
Sbjct 8902 GTGATCTTGCCCATCGTAGGCTCCTTCATGTGGATGTTGAGCGATTGAGACTGGTCGATA 8843
Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTA-CGCATCGACATTTCCCATACGGT 22323
|| || || || ||||| ||||| | | | |||| ||| || || ||||| || ||
Sbjct 8842 AAGGCACCACGGTCGGCAGCCATCTGGA-CGATGTTGCGCTGAGAAATCTCCCACACAGT 8784
Query 22324 CTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACG-GACCCGTTAT 22382
|||||| || | |||| || || || | | || | | || || || ||
Sbjct 8783 CTTGTAGAGGGCCTTGATGTCGTCGGGGAT-GTTGGGAATTTGTTGAATAGAGCCATTGG 8725
Query 22383 TGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGA 22442
||||| || || || | || ||||| ||| ||| || | || || |
Sbjct 8724 ACGCGATGATGCGGTTCTTCATGTTGTCCGACCACAGACCCATGTCGACAAGGTCCTTAA 8665
Query 22443 CCAG--ATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTT 22500
|| ||| |||| || ||||| ||||| || | | || || || |||||||||
Sbjct 8664 GCAACCATG--GGTTGACAACTTGGAACTCACCAGCGAGCACACGACGCGAGTAAATGTT 8607
Query 22501 GGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGG 22560
||| ||| | || || ||| | || ||| || || || || ||||| || || ||
Sbjct 8606 GGAGGTGTAGGGCTCAAAACACTCGTTGAAGCCAAGGATTTGGCTAGTCGAGGCAGTAGG 8547
Query 22561 CATCGGCGCCAACAGTAGCGA---GTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAG 22617
||| || | ||||| ||| | ||| | || |||||| | ||| | | ||||||
Sbjct 8546 CATGGGAG-CAACA--AGCAAGCTGTTGCGCACGCCGTGTAGAGCAATCTCGCCCTTGAG 8490
Query 22618 CATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACAC 22677
| ||||||||| || || | |||||| |||| |||||| ||||||||||| |
Sbjct 8489 AGCCTCCCAGTCCCAGAGGTCTGTGGGCGTC---TTGTTCCACATGTCGTATTGCAAGAT 8433
Query 22678 GCCGCGACTCGCCGGGCTGCCTTCGTACG 22706
||| || ||||| ||||||||||
Sbjct 8432 GCCCTGAGAGGCCGGCGAACCTTCGTACG 8404
>seq1666
Length=59928
Score = 158 bits (174), Expect = 1e-33
Identities = 306/446 (69%), Gaps = 12/446 (3%)
Strand=Plus/Minus
Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034
|| ||||| || || |||||||| ||||| ||||| ||| ||| ||| | || ||
Sbjct 55639 CTCATCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCGTCCATCTTC 55580
Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094
||| | ||||| || || |||||||| || ||||| || ||||||| | || || |||
Sbjct 55579 TGGCTCAAGAAGCGTGGTCTGATGCCTGGTCTGACATTCTCCAACGAGCTCATCTCTCGC 55520
Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACAT--TGTCAATAAAC 58152
|||||||| | || || || ||||| ||||| | | ||||||||| ||| || |
Sbjct 55519 GACGAGGGCATGCACACCGACTTTGCCTGCCTGCTCTTCTCTCACATCAAGTC--GAAGC 55462
Query 58153 CGACGCGGGATCGCATCTT--GGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTT 58210
|||| | || | | || | | || || |||||| |||| ||| || | |||||
Sbjct 55461 CGACCCCCGA--GGCTGTTGAGAAGATCATTGTCGAGGCCGTCGAGATTGAGCAAGAGTT 55404
Query 58211 TGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTA 58270
| || || || || || || || ||||||| |||||| || | |||| ||||
Sbjct 55403 CCTGACTGACGCTCTCCCCGTTGCTCTGCTCGGCATGAACGCTGGCCTCATGTGCCAGTA 55344
Query 58271 CATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGA--GAGCGTCATTACAAC 58328
||||||||||||||| ||| | || || | | || | | | || || ||||||
Sbjct 55343 CATTGAGTTTGTTGCTGACCGCCTGCTGGTGGCGCT--TGGCAACAAGAAGCACTACAAC 55286
Query 58329 ACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTC 58388
| | || || || || || ||| | || |||||| | |||||||| ||||| |||
Sbjct 55285 TCTACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAACGGCAAGACCAACTTCTTC 55226
Query 58389 GaaaaaaaaGTTAGCGAATATCAAAA 58414
|| || ||| | || ||||||||
Sbjct 55225 GAGAAGCGCGTTGGTGACTATCAAAA 55200
>seq2177
Length=34801
Score = 89.7 bits (98), Expect = 5e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261
||||| ||||| ||||| ||||| || |||||| |||| ||||| | || |||| ||
Sbjct 6024 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGACACCATC 6083
Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321
|| | ||||| | || ||||||||| ||| | || || ||||||||||| ||
Sbjct 6084 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 6143
Query 31322 ATATTCGCTGGCAAACAGTTGGAAGAC 31348
|| ||||| ||||| ||| | || |||
Sbjct 6144 ATCTTCGCCGGCAAGCAGCTCGAGGAC 6170
>seq3589
Length=6346
Score = 82.4 bits (90), Expect = 7e-11
Identities = 131/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276
|| ||||| || |||||| |||| || ||| ||||||||| |||| | |||||
Sbjct 3642 ACTGGCAAGACCATCACCCTCGAAGTCGAATCGTCCGACACCATCGACAATGTCAAGTCC 3583
Query 31277 AGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAA 31336
| || ||| ||||| ||| | ||||| ||||||||||| | || ||||| |||||
Sbjct 3582 AAGATTCAGGATAAGGAGGGCATCCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAG 3523
Query 31337 CAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCAT 31396
|| | || ||| | || | ||| || |||||||| || ||||| || || ||
Sbjct 3522 CAACTCGAGGACGGTCGCACCCTTGCCGACTACAACATTCAGAAGGAATCCACCCTCCAC 3463
Query 31397 CTGGTACT 31404
|||| ||
Sbjct 3462 TTGGTGCT 3455
Score = 82.4 bits (90), Expect = 7e-11
Identities = 142/205 (69%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276
|| ||||| || |||||| | || || || | ||||||| |||| | |||||
Sbjct 3920 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAACGTCAAGTCC 3861
Query 31277 AGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAA 31336
| || ||||||||| ||| | || || ||| |||||||||| || |||||||||||
Sbjct 3860 AAGATCCAGGACAAGGAGGGCATCCCCCCTGAC-AGCAGCGTCTCATCTTCGCTGGCAAG 3802
Query 31337 CAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCAT 31396
||| | || || || | ||| || ||||| || || || ||||| |||||
Sbjct 3801 CAGCTTGAGGATGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCGACGCTTCAC 3742
Query 31397 CTGGTACTTAGACTGAGGGGCGGTA 31421
|| || ||| | ||| | |||||||
Sbjct 3741 CTCGTCCTTCGCCTGCGTGGCGGTA 3717
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445734371684160
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