Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq1666 125 1e-23
seq5249 91.5 3e-13
>seq1666
Length=59928
Score = 125 bits (138), Expect = 1e-23
Identities = 299/444 (67%), Gaps = 21/444 (5%)
Strand=Plus/Minus
Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980
||||||||||| || || || |||||||| || || | ||||| ||||| |||||| ||
Sbjct 55633 GCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCGTCCATCTTCTGGCTC 55574
Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040
||||| | ||| | |||||||||| || | |||||| ||| |||| ||| | |||||
Sbjct 55573 AAGAAGCGTGGTCTGATGCCTGGTCTGACATTCTCCAACGAGCTCATCTCTCGCGACGAG 55514
Query 102041 GGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC--CCAT 102098
|| | || ||||||||| ||| |||| || | | || || || ||
Sbjct 55513 GGCATGCACACCGACTTTGCCTGCCTGCTCTTCTCTCA-CATCAAGTCGAAGCCGACCCC 55455
Query 102099 CAAG-----AGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATT 102153
| || || | ||| |||||| || |||||| ||||| ||||| ||
Sbjct 55454 CGAGGCTGTTGAGAAGAT------CATTGTC---GAGGCCGTCGAGATTGAGCAAGAGTT 55404
Query 102154 TCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAG-TTGATGAGCCAGT 102212
|| || | | || || ||| | | || |||||| || | | ||| ||||||
Sbjct 55403 CCTGACTGACGCTCTCCCCGTTGCTCTGCTCGGCATGAAC-GCTGGCCTCATGTGCCAGT 55345
Query 102213 ACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAA-AAGCACTATAAT 102271
||||||| ||||| || || || |||| | | || | | || |||||||| ||
Sbjct 55344 ACATTGAGTTTGTTGCTGACCGCCTGCTGGTGGCGCTTGG-CAACAAGAAGCACTACAAC 55286
Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331
||||||||||||| |||||||| || ||||| ||| | ||||||||||| ||
Sbjct 55285 TCTACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAACGGCAAGACCAACTTCTTC 55226
Query 102332 GAAAAGAGAGTCGCCGAGTATCAA 102355
|| ||| | || | || ||||||
Sbjct 55225 GAGAAGCGCGTTGGTGACTATCAA 55202
>seq5249
Length=10599
Score = 91.5 bits (100), Expect = 3e-13
Identities = 169/248 (68%), Gaps = 0/248 (0%)
Strand=Plus/Minus
Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845
|||| ||| || || |||||||| || || || ||| || || || || || |||
Sbjct 7484 CCGATTCCACCGGCCGTCTTGGAAATCATGGCACAAGTCTTGAGGGTGTCGTAGATGCCC 7425
Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTT 94905
|| ||||| || || | | | | | | |||||| || | ||| ||||| || ||
Sbjct 7424 TCGATGCTGTCCTCCTTCATGTCGATCAAGAAGCATGATGCAAGCTGGGGCTTGGGGGTA 7365
Query 94906 CCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATAT 94965
||| || |||| ||||| ||||| |||||||| || | ||||| | | ||
Sbjct 7364 CCAGCGTTGAACAAGGTGGGAGAAGCGTGGGTAAAGTACTTTTGAGACATCAAGTTGTAC 7305
Query 94966 GTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATG 95025
||||||||| | || |||| ||||| || || ||||| |||||||||||||||
Sbjct 7304 GTTTCAATGGCCTTTTCAATGTTCTCGCCGTGGATTCCAACAGCGACACGCATAATCATG 7245
Query 95026 TCCTGAGG 95033
| ||| ||
Sbjct 7244 TGCTGTGG 7237
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989511120849340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |