Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1666 125 1e-23 seq5249 91.5 3e-13 >seq1666 Length=59928 Score = 125 bits (138), Expect = 1e-23 Identities = 299/444 (67%), Gaps = 21/444 (5%) Strand=Plus/Minus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 ||||||||||| || || || |||||||| || || | ||||| ||||| |||||| || Sbjct 55633 GCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCGTCCATCTTCTGGCTC 55574 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 ||||| | ||| | |||||||||| || | |||||| ||| |||| ||| | ||||| Sbjct 55573 AAGAAGCGTGGTCTGATGCCTGGTCTGACATTCTCCAACGAGCTCATCTCTCGCGACGAG 55514 Query 102041 GGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC--CCAT 102098 || | || ||||||||| ||| |||| || | | || || || || Sbjct 55513 GGCATGCACACCGACTTTGCCTGCCTGCTCTTCTCTCA-CATCAAGTCGAAGCCGACCCC 55455 Query 102099 CAAG-----AGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATT 102153 | || || | ||| |||||| || |||||| ||||| ||||| || Sbjct 55454 CGAGGCTGTTGAGAAGAT------CATTGTC---GAGGCCGTCGAGATTGAGCAAGAGTT 55404 Query 102154 TCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAG-TTGATGAGCCAGT 102212 || || | | || || ||| | | || |||||| || | | ||| |||||| Sbjct 55403 CCTGACTGACGCTCTCCCCGTTGCTCTGCTCGGCATGAAC-GCTGGCCTCATGTGCCAGT 55345 Query 102213 ACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAA-AAGCACTATAAT 102271 ||||||| ||||| || || || |||| | | || | | || |||||||| || Sbjct 55344 ACATTGAGTTTGTTGCTGACCGCCTGCTGGTGGCGCTTGG-CAACAAGAAGCACTACAAC 55286 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 ||||||||||||| |||||||| || ||||| ||| | ||||||||||| || Sbjct 55285 TCTACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAACGGCAAGACCAACTTCTTC 55226 Query 102332 GAAAAGAGAGTCGCCGAGTATCAA 102355 || ||| | || | || |||||| Sbjct 55225 GAGAAGCGCGTTGGTGACTATCAA 55202 >seq5249 Length=10599 Score = 91.5 bits (100), Expect = 3e-13 Identities = 169/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845 |||| ||| || || |||||||| || || || ||| || || || || || ||| Sbjct 7484 CCGATTCCACCGGCCGTCTTGGAAATCATGGCACAAGTCTTGAGGGTGTCGTAGATGCCC 7425 Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTT 94905 || ||||| || || | | | | | | |||||| || | ||| ||||| || || Sbjct 7424 TCGATGCTGTCCTCCTTCATGTCGATCAAGAAGCATGATGCAAGCTGGGGCTTGGGGGTA 7365 Query 94906 CCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATAT 94965 ||| || |||| ||||| ||||| |||||||| || | ||||| | | || Sbjct 7364 CCAGCGTTGAACAAGGTGGGAGAAGCGTGGGTAAAGTACTTTTGAGACATCAAGTTGTAC 7305 Query 94966 GTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATG 95025 ||||||||| | || |||| ||||| || || ||||| ||||||||||||||| Sbjct 7304 GTTTCAATGGCCTTTTCAATGTTCTCGCCGTGGATTCCAACAGCGACACGCATAATCATG 7245 Query 95026 TCCTGAGG 95033 | ||| || Sbjct 7244 TGCTGTGG 7237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989511120849340