Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq5249 158 2e-33
seq1666 93.3 5e-14
>seq5249
Length=10599
Score = 158 bits (174), Expect = 2e-33
Identities = 444/677 (66%), Gaps = 6/677 (1%)
Strand=Plus/Minus
Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293
|| ||||| | | ||| || |||| | || || || ||||| || |||||||||| |
Sbjct 7796 GGGCACATGAGAGTCCAATCGCCGTTTTGCTCGACACGCTTCATGAACAGATCAGGAACC 7737
Query 63294 CAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63352
|| || || || || || || | || | || || ||||| ||||| ||
Sbjct 7736 CACAGGGCGTAGAACAAG-TCGCGTGCGCGGACCTCTTCCTTTCCGTGGTTCTTGCGGAG 7678
Query 63353 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63412
|||||||| | | | || | ||||| || |||| ||| ||||| | | | |||||
Sbjct 7677 GTCGAGGAAGGGGAAGACGTCGGCGTGCCAAGGCTCCAGGTAGATGGCAAAAGCACCAGG 7618
Query 63413 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63472
|| ||||| || ||||| || | ||| | ||||||||| || || || | | ||| ||
Sbjct 7617 GCGCTTGTTGCCACCCTGGTCAACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGG 7558
Query 63473 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATT 63532
||| | ||||| || | || |||||||| | || ||| ||| | | ||| ||
Sbjct 7557 AATCAGGCCGTTGGAGGTGCCGTTGGTACCAGCAATGTAGGAGCCAGTTGAACGGATGCG 7498
Query 63533 ACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 63590
| |||| |||| ||||| || ||| | || || || | || || || |
Sbjct 7497 GTGGACGTTGA--GACCGATTCCACCGGCCGTCTTGGAAATCATGGCACAAGTCTTGAGG 7440
Query 63591 GTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT 63650
||||| |||||||| || ||||| || || |||||| | | || || | |
Sbjct 7439 GTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCGATCAAGAAGCATGATGCAAGC 7380
Query 63651 TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63710
||| | | || || || || || ||||| ||||||||||| ||||| | |||| |
Sbjct 7379 TGGGGCTTGGGGGTACCAGCGTTGAACAAGGTGGGAGAAGCGTGGGTAAAGTACTTTTGA 7320
Query 63711 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63770
|| | | |||||||| ||||| || || || | | || ||||| || |||
Sbjct 7319 GACATCAAGTTGTACGTTTCAATGGCCTTTTCAATGTTCTCGCCGTGGATTCCAACAGCG 7260
Query 63771 ACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAG 63830
|||||||| | ||||||||| |||||||| ||| ||| | || | ||||||
Sbjct 7259 ACACGCATAATCATGTGCTGTGGTCTTTCGGCAACCTTGCCATCGATGCGGAGCAAGTAT 7200
Query 63831 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 63890
|| | || | || || || ||||| || | ||| ||||| || ||||| | ||
Sbjct 7199 GACCTCTCGAGCGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATG 7140
Query 63891 ACCGAATTGAGCTTATC 63907
|||| ||||||| |||
Sbjct 7139 GCCGAGTTGAGCTCATC 7123
>seq1666
Length=59928
Score = 93.3 bits (102), Expect = 5e-14
Identities = 110/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641
|| || || ||| ||||| |||||||| | | || | ||||| || || || ||
Sbjct 55491 CAGGCAAAGTCGGTGTGCATGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAATGTCAGA 55550
Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701
|| ||||| || |||||||| || ||||| || ||||| ||||| || ||| ||||||
Sbjct 55551 CCAGGCATCAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAGGAGCCGCTGAAGAAG 55610
Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAG 33730
|| || || || ||||||||||| || ||
Sbjct 55611 ATACCCTCGACGGCAGCAAAGGCGATGAG 55639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629772347605440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |