Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5249 158 2e-33 seq1666 93.3 5e-14 >seq5249 Length=10599 Score = 158 bits (174), Expect = 2e-33 Identities = 444/677 (66%), Gaps = 6/677 (1%) Strand=Plus/Minus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || ||||| | | ||| || |||| | || || || ||||| || |||||||||| | Sbjct 7796 GGGCACATGAGAGTCCAATCGCCGTTTTGCTCGACACGCTTCATGAACAGATCAGGAACC 7737 Query 63294 CAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63352 || || || || || || || | || | || || ||||| ||||| || Sbjct 7736 CACAGGGCGTAGAACAAG-TCGCGTGCGCGGACCTCTTCCTTTCCGTGGTTCTTGCGGAG 7678 Query 63353 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63412 |||||||| | | | || | ||||| || |||| ||| ||||| | | | ||||| Sbjct 7677 GTCGAGGAAGGGGAAGACGTCGGCGTGCCAAGGCTCCAGGTAGATGGCAAAAGCACCAGG 7618 Query 63413 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63472 || ||||| || ||||| || | ||| | ||||||||| || || || | | ||| || Sbjct 7617 GCGCTTGTTGCCACCCTGGTCAACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGG 7558 Query 63473 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATT 63532 ||| | ||||| || | || |||||||| | || ||| ||| | | ||| || Sbjct 7557 AATCAGGCCGTTGGAGGTGCCGTTGGTACCAGCAATGTAGGAGCCAGTTGAACGGATGCG 7498 Query 63533 ACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 63590 | |||| |||| ||||| || ||| | || || || | || || || | Sbjct 7497 GTGGACGTTGA--GACCGATTCCACCGGCCGTCTTGGAAATCATGGCACAAGTCTTGAGG 7440 Query 63591 GTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT 63650 ||||| |||||||| || ||||| || || |||||| | | || || | | Sbjct 7439 GTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCGATCAAGAAGCATGATGCAAGC 7380 Query 63651 TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63710 ||| | | || || || || || ||||| ||||||||||| ||||| | |||| | Sbjct 7379 TGGGGCTTGGGGGTACCAGCGTTGAACAAGGTGGGAGAAGCGTGGGTAAAGTACTTTTGA 7320 Query 63711 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63770 || | | |||||||| ||||| || || || | | || ||||| || ||| Sbjct 7319 GACATCAAGTTGTACGTTTCAATGGCCTTTTCAATGTTCTCGCCGTGGATTCCAACAGCG 7260 Query 63771 ACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAG 63830 |||||||| | ||||||||| |||||||| ||| ||| | || | |||||| Sbjct 7259 ACACGCATAATCATGTGCTGTGGTCTTTCGGCAACCTTGCCATCGATGCGGAGCAAGTAT 7200 Query 63831 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 63890 || | || | || || || ||||| || | ||| ||||| || ||||| | || Sbjct 7199 GACCTCTCGAGCGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATG 7140 Query 63891 ACCGAATTGAGCTTATC 63907 |||| ||||||| ||| Sbjct 7139 GCCGAGTTGAGCTCATC 7123 >seq1666 Length=59928 Score = 93.3 bits (102), Expect = 5e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||| ||||| |||||||| | | || | ||||| || || || || Sbjct 55491 CAGGCAAAGTCGGTGTGCATGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAATGTCAGA 55550 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || |||||||| || ||||| || ||||| ||||| || ||| |||||| Sbjct 55551 CCAGGCATCAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAGGAGCCGCTGAAGAAG 55610 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAG 33730 || || || || ||||||||||| || || Sbjct 55611 ATACCCTCGACGGCAGCAAAGGCGATGAG 55639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629772347605440