Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq382 123 2e-23
>seq382
Length=29631
Score = 123 bits (136), Expect = 2e-23
Identities = 215/305 (70%), Gaps = 11/305 (4%)
Strand=Plus/Minus
Query 21111 ACGTAAAACTGACACAAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGG 21169
||||| ||||| | |||| | ||| || || || || |||||| | |||||| || ||
Sbjct 28323 ACGTAGAACTG-CGCAAACATGTGGCACGGCGGCAGGGCCATCTTCTTGAGGTCGGCCGG 28265
Query 21170 GTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGAT---CCAC 21226
||||||||||| ||| | ||||||||| ||| |||| ||| || | | |
Sbjct 28264 GTTCCACGCGCTCATGATGATGCGCCGGTCGAAGGGCT---TGTGGCGCAGCTTGTCGAT 28208
Query 21227 CACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTC 21286
|||| ||||||||| || ||||| ||| ||||| ||||| | | ||| ||
Sbjct 28207 GACGTCGGCCAGCTGGTCGACGCCCTGTCCCGTGTAGTCGGCGTGGCAGTCGACGTAGTC 28148
Query 21287 CGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTC 21346
|| ||||| || | |||||||||||||||||| || ||||| |||||||| |||||
Sbjct 28147 GGCGCCAAAGTGCCGCCACTGGAACCCGTACACGGGGCCCAGGTCGCCCTCCTCGCGGTG 28088
Query 21347 CCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTA-CG 21404
|| || || ||| | ||| || || || ||||||| ||||||| || || | |
Sbjct 28087 GCC-CAGTCCCACGCTGTCCAGGAACGCCCGCGACCCGTTGCCGTCCCAGATCTTGATCC 28029
Query 21405 CCGCG 21409
|||||
Sbjct 28028 CCGCG 28024
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/208 (71%), Gaps = 8/208 (4%)
Strand=Plus/Minus
Query 20883 AGCCGCGGAAACGGACGCGGGGTCCTC-CGC---AGCTGAAGCAGCAGGGGATCAACGTG 20938
||| |||| || | ||||||| ||| ||| ||||| || | || | || || ||
Sbjct 28611 AGCAGCGGGAA--GTCGCGGGG--CTCGCGCTCGAGCTGCTGCTGAAGCGCGTCGACATG 28556
Query 20939 GTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGT 20998
|| | ||| ||||| ||||| |||| ||||||| | || || |||| |
Sbjct 28555 GTCGAGGTAGACGTGCGCGTCGCCCATGGTGTGCGTCAGCGAGCCGGGCACCAGGTCGCA 28496
Query 20999 GACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAG 21058
|||||| || | || | || || |||||||||||||| ||||| || || || |||||
Sbjct 28495 GACGTGTGCCAGCATGTGGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACGCCGAG 28436
Query 21059 GCCCATGTCGGCGGACCTCTGGTACAGC 21086
|||||||||| ||| | ||||||||||
Sbjct 28435 GCCCATGTCGCAGGAGCGCTGGTACAGC 28408
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427746032687040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |