Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq382 123 2e-23 >seq382 Length=29631 Score = 123 bits (136), Expect = 2e-23 Identities = 215/305 (70%), Gaps = 11/305 (4%) Strand=Plus/Minus Query 21111 ACGTAAAACTGACACAAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGG 21169 ||||| ||||| | |||| | ||| || || || || |||||| | |||||| || || Sbjct 28323 ACGTAGAACTG-CGCAAACATGTGGCACGGCGGCAGGGCCATCTTCTTGAGGTCGGCCGG 28265 Query 21170 GTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGAT---CCAC 21226 ||||||||||| ||| | ||||||||| ||| |||| ||| || | | | Sbjct 28264 GTTCCACGCGCTCATGATGATGCGCCGGTCGAAGGGCT---TGTGGCGCAGCTTGTCGAT 28208 Query 21227 CACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTC 21286 |||| ||||||||| || ||||| ||| ||||| ||||| | | ||| || Sbjct 28207 GACGTCGGCCAGCTGGTCGACGCCCTGTCCCGTGTAGTCGGCGTGGCAGTCGACGTAGTC 28148 Query 21287 CGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTC 21346 || ||||| || | |||||||||||||||||| || ||||| |||||||| ||||| Sbjct 28147 GGCGCCAAAGTGCCGCCACTGGAACCCGTACACGGGGCCCAGGTCGCCCTCCTCGCGGTG 28088 Query 21347 CCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTA-CG 21404 || || || ||| | ||| || || || ||||||| ||||||| || || | | Sbjct 28087 GCC-CAGTCCCACGCTGTCCAGGAACGCCCGCGACCCGTTGCCGTCCCAGATCTTGATCC 28029 Query 21405 CCGCG 21409 ||||| Sbjct 28028 CCGCG 28024 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/208 (71%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 20883 AGCCGCGGAAACGGACGCGGGGTCCTC-CGC---AGCTGAAGCAGCAGGGGATCAACGTG 20938 ||| |||| || | ||||||| ||| ||| ||||| || | || | || || || Sbjct 28611 AGCAGCGGGAA--GTCGCGGGG--CTCGCGCTCGAGCTGCTGCTGAAGCGCGTCGACATG 28556 Query 20939 GTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGT 20998 || | ||| ||||| ||||| |||| ||||||| | || || |||| | Sbjct 28555 GTCGAGGTAGACGTGCGCGTCGCCCATGGTGTGCGTCAGCGAGCCGGGCACCAGGTCGCA 28496 Query 20999 GACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAG 21058 |||||| || | || | || || |||||||||||||| ||||| || || || ||||| Sbjct 28495 GACGTGTGCCAGCATGTGGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACGCCGAG 28436 Query 21059 GCCCATGTCGGCGGACCTCTGGTACAGC 21086 |||||||||| ||| | |||||||||| Sbjct 28435 GCCCATGTCGCAGGAGCGCTGGTACAGC 28408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427746032687040