Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq1666 123 2e-23
seq3589 96.9 3e-15
>seq1666
Length=59928
Score = 123 bits (136), Expect = 2e-23
Identities = 166/230 (72%), Gaps = 1/230 (0%)
Strand=Plus/Minus
Query 52837 GAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGC 52896
||||||||||| ||||| ||||||| | || |||||| | ||||| | || | |||
Sbjct 55429 GAGGCCGTCGAGATTGAGCAAGAGTTCCTGACTGACGCTCTCCCCGTTGCTCTGCTCGGC 55370
Query 52897 ATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAG 52956
|||||||| | | |||||| ||||||| ||||||||||| ||| | ||| || || |
Sbjct 55369 ATGAACGCTGGCCTCATGTGCCAGTACATTGAGTTTGTTGCTGACCGCCTGCTGGTGGCG 55310
Query 52957 CTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCG 53016
|| || | ||| |||| || | |||||||| || ||| | ||||| |||
Sbjct 55309 CTTGGCAACAAGAAGCACTACAACTCTACCAACCCCTTCGACTTCATGGAGAACATTTCG 55250
Query 53017 CTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTA-CAAAA 53065
||| | ||||| || ||||| ||||||| || || || || || |||||
Sbjct 55249 CTCAACGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGACTATCAAAA 55200
>seq3589
Length=6346
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | || ||||| | || ||||| ||||| ||||| || || |
Sbjct 3212 CCACCACGGAGACGAAGCACCAAGTGCAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCC 3271
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || || ||| |||||||| || || ||| | ||||| || ||||||||||| ||
Sbjct 3272 AACGTTCTGCCGTCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGATCGGGCGGG 3331
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| || || ||||| ||| || || | | || | ||||| | | ||| ||
Sbjct 3332 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATCGTGTCTGACGACTCGACT 3391
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||| || | |||||||||||||| || || ||||| || ||||||
Sbjct 3392 TCAAGCGTAATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCATA 3439
Score = 82.4 bits (90), Expect = 8e-11
Identities = 159/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594
|| || || || | ||| | || ||||| | || ||||| || || ||||| || |||
Sbjct 2981 TGACCACCGCGGAGACGGAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCG 3040
Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654
|| || | || || ||||| || || || | ||||| || ||||| || ||
Sbjct 3041 GCCAACGTCCGGCCATCCTCAAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGG 3100
Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTC 139713
|| ||||| || ||||| ||| | || | || | | || | || || | | |||
Sbjct 3101 GGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGACGTTGTCGATCGTATCCGAAGACTC 3159
Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||||||| || | ||||||||||||||| || || ||||| || ||||||
Sbjct 3160 CACCTCAAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATA 3211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496028357801600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |