Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1666 123 2e-23 seq3589 96.9 3e-15 >seq1666 Length=59928 Score = 123 bits (136), Expect = 2e-23 Identities = 166/230 (72%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 52837 GAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGC 52896 ||||||||||| ||||| ||||||| | || |||||| | ||||| | || | ||| Sbjct 55429 GAGGCCGTCGAGATTGAGCAAGAGTTCCTGACTGACGCTCTCCCCGTTGCTCTGCTCGGC 55370 Query 52897 ATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAG 52956 |||||||| | | |||||| ||||||| ||||||||||| ||| | ||| || || | Sbjct 55369 ATGAACGCTGGCCTCATGTGCCAGTACATTGAGTTTGTTGCTGACCGCCTGCTGGTGGCG 55310 Query 52957 CTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCG 53016 || || | ||| |||| || | |||||||| || ||| | ||||| ||| Sbjct 55309 CTTGGCAACAAGAAGCACTACAACTCTACCAACCCCTTCGACTTCATGGAGAACATTTCG 55250 Query 53017 CTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTA-CAAAA 53065 ||| | ||||| || ||||| ||||||| || || || || || ||||| Sbjct 55249 CTCAACGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGACTATCAAAA 55200 >seq3589 Length=6346 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| ||||| ||||| || || | Sbjct 3212 CCACCACGGAGACGAAGCACCAAGTGCAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCC 3271 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||| |||||||| || || ||| | ||||| || ||||||||||| || Sbjct 3272 AACGTTCTGCCGTCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGATCGGGCGGG 3331 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | ||||| | | ||| || Sbjct 3332 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATCGTGTCTGACGACTCGACT 3391 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | |||||||||||||| || || ||||| || |||||| Sbjct 3392 TCAAGCGTAATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCATA 3439 Score = 82.4 bits (90), Expect = 8e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || || || | ||| | || ||||| | || ||||| || || ||||| || ||| Sbjct 2981 TGACCACCGCGGAGACGGAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCG 3040 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || || | || || ||||| || || || | ||||| || ||||| || || Sbjct 3041 GCCAACGTCCGGCCATCCTCAAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGG 3100 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTC 139713 || ||||| || ||||| ||| | || | || | | || | || || | | ||| Sbjct 3101 GGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGACGTTGTCGATCGTATCCGAAGACTC 3159 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||||| || | ||||||||||||||| || || ||||| || |||||| Sbjct 3160 CACCTCAAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATA 3211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496028357801600