Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq5249 149 8e-31
>seq5249
Length=10599
Score = 149 bits (164), Expect = 8e-31
Identities = 422/644 (66%), Gaps = 6/644 (1%)
Strand=Plus/Minus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATG 72080
|| || ||||| || |||||||||| ||| || || || || || || | | |
Sbjct 7763 ACACGCTTCATGAACAGATCAGGAACCCACAGGGCGTAGAACAAG-TCGCGTGCGCGGAC 7705
Query 72081 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140
||| || ||||| ||||| || |||||||| | | | || | ||||| ||
Sbjct 7704 CTCTTCCTTTCCGTGGTTCTTGCGGAGGTCGAGGAAGGGGAAGACGTCGGCGTGCCAAGG 7645
Query 72141 TTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 72200
|||| ||| ||||| | | | || || || ||||| || ||||| || | ||| | |||
Sbjct 7644 CTCCAGGTAGATGGCAAAAGCACCAGGGCGCTTGTTGCCACCCTGGTCAACGTAGCGAGC 7585
Query 72201 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGA 72260
|||||| || || || | | ||| ||||| | || ||||| | || ||||| || |
Sbjct 7584 GGTGTTGTTGTAGACACGGAGCATGGGAATCAGGCCGTTGGAGGTGCCGTTGGTACCAGC 7525
Query 72261 GATATAGCTTCCACTGGCACGAATATTGCTAA--TTGATAGACCTATTCCCCCTGCCATT 72318
|| ||| ||| | | ||| || | | |||| |||| ||||| || ||| |
Sbjct 7524 AATGTAGGAGCCAGTTGAACGGATGCGGTGGACGTTGA--GACCGATTCCACCGGCCGTC 7467
Query 72319 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 72378
|| || || | || || || | || || ||||||||||| || || || ||| ||
Sbjct 7466 TTGGAAATCATGGCACAAGTCTTGAGGGTGTCGTAGATGCCCTCGATGCTGTCCTCCTTC 7407
Query 72379 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 72438
|||| | | || || | | ||| | || || || || || |||||
Sbjct 7406 ATGTCGATCAAGAAGCATGATGCAAGCTGGGGCTTGGGGGTACCAGCGTTGAACAAGGTG 7347
Query 72439 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 72498
||||||||||| ||||| | |||| ||||| | |||||||| ||||| || |||
Sbjct 7346 GGAGAAGCGTGGGTAAAGTACTTTTGAGACATCAAGTTGTACGTTTCAATGGCCTTTTCA 7287
Query 72499 ATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACG 72558
|| | | || ||||| || ||||||||||| | ||| ||||| |||||||| |
Sbjct 7286 ATGTTCTCGCCGTGGATTCCAACAGCGACACGCATAATCATGTGCTGTGGTCTTTCGGCA 7227
Query 72559 ATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 72618
| |||| || || | |||||| || | || | || || || ||||| || | |
Sbjct 7226 ACCTTGCCATCGATGCGGAGCAAGTATGACCTCTCGAGCGTCTTGAAGCCAAAGTATTGG 7167
Query 72619 TATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATC 72662
|| ||||| || ||||| | || |||| ||||| | |||
Sbjct 7166 TAGTTGAAGTCGCGGTCGTAGACGATGGCCGAGTTGAGCTCATC 7123
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671090978648480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |