Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq1666 113 5e-20
seq3589 87.8 2e-12
>seq1666
Length=59928
Score = 113 bits (124), Expect = 5e-20
Identities = 166/231 (72%), Gaps = 3/231 (1%)
Strand=Plus/Minus
Query 50632 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50691
|| |||||||| || || ||||||| | || |||||| | ||||| || || | |||
Sbjct 55429 GAGGCCGTCGAGATTGAGCAAGAGTTCCTGACTGACGCTCTCCCCGTTGCTCTGCTCGGC 55370
Query 50692 ATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAG 50751
|||||||| | | | |||||| ||||||||||||||||||| ||| | || || || |
Sbjct 55369 ATGAACGCTGGCCTCATGTGCCAGTACATTGAGTTTGTTGCTGACCGCCTGCTGGTGGCG 55310
Query 50752 CTGGGACAAC-CGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACATATC 50810
|| || |||| ||| |||| || | |||||||| || ||| | ||||| ||
Sbjct 55309 CTTGG-CAACAAGAAGCACTACAACTCTACCAACCCCTTCGACTTCATGGAGAACATTTC 55251
Query 50811 GTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATA-CAAAA 50860
| | | ||||| || ||||| ||||| | || || || || || |||||
Sbjct 55250 GCTCAACGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGACTATCAAAA 55200
>seq3589
Length=6346
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| || || ||||| |||||||| || || || || ||| ||||| || || ||
Sbjct 3242 GTTGACTCCTTTTGGATGTTGTAGTCTGCCAACGTTCTGCCGTCCTCGAGCTGCTTGCCT 3301
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
||| | ||||| || ||||||||||| || || || || ||||| || || ||
Sbjct 3302 GCAAAAATCAGGCGCTGCTGATCGGGCGGGATACCCTCCTTGTCTTGGATCTTCGACTTG 3361
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | |||||| | | || ||||||| || | |||||||||||||| ||
Sbjct 3362 ACGTTGTCAATCGTGTCTGACGACTCGACTTCAAGCGTAATGGTCTTGCCGGTCAAAGTC 3421
Query 143168 TTTACGAATATTTGCATA 143185
|| ||||| || ||||||
Sbjct 3422 TTGACGAAGATCTGCATA 3439
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506977971015360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |