Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq5249 194 2e-44 seq1666 150 3e-31 >seq5249 Length=10599 Score = 194 bits (214), Expect = 2e-44 Identities = 364/530 (69%), Gaps = 4/530 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||||| | ||| ||||| | || |||||| | | ||||| | | || Sbjct 7531 ACCAACGGCACCTCCAACGGCCTGATTCCCATGCTCCGTGTCTACAACAACACCGCTCGC 7590 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 |||||| ||||| ||||| || || || || ||| | ||| ||||| |||| |||||| Sbjct 7591 TACGTTGACCAGGGTGGCAACAAGCGCCCTGGTGCTTTTGCCATCTACCTGGAGCCTTGG 7650 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||| ||||| || ||| |||| | ||||| ||| || ||||||| || Sbjct 7651 CACGCCGACGTCTTCCCCTTCCTCGACCTCCGCAAGAACCACGGAAAGGAAGAGGTCCGC 7710 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 || | |||||||| || || || ||||| || ||| ||||||||||||| ||| | | Sbjct 7711 GCACGCGACTTGTTCTACGCCCTGTGGGTTCCTGATCTGTTCATGAAGCGTGTCGAGCAA 7770 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 ||| | |||| || |||||||| || | | || ||||| ||||| || ||| Sbjct 7771 AACGGCGATTGGACTCTCATGTGCCCTCACGAGGCCCCGGGTCTCGCCGATGTCTACGGC 7830 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGT 97165 || |||||||||| ||| | |||||| || ||||| |||||||| | | Sbjct 7831 GACGAGTTTGAGGAGCTGTATGAGAGGTACGAGAGGGAAGGCCGTGGTCGTGAGACTA-T 7889 Query 97166 CGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224 | || | |||| |||||| | ||||| || ||||||| ||||| || | || | Sbjct 7890 CCGCGC-CCAGAAGCTGTGGTACGCCATTTTGGAGGCTCAGACCGAGACCGGCAACCCCT 7948 Query 97225 ACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCA 97284 ||| ||||||||||| | || ||||| ||||||||| || |||| ||||| Sbjct 7949 TCATGCTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAAAAGAACCTGGGTACCATTC 8008 Query 97285 AGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 ||||||| |||||| || ||||| |||||| | | || |||||| Sbjct 8009 GCAGCTCCAACCTGTGCTGTGAGATTGTCGAGTACACTGCCCCCGACGAG 8058 >seq1666 Length=59928 Score = 150 bits (166), Expect = 3e-31 Identities = 239/336 (71%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| ||||||| || ||||| | ||| ||| | |||||| Sbjct 56096 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCCGAGGAGATTGATCTG 56037 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || |||| ||| | | ||| ||| || ||||| || || || Sbjct 56036 TCCAAGGATCTCCACGACTGGAACAAGCGTCTGAACGACGACGAGCGCTTCTTCATCTCC 55977 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| || | ||||||||||||| || ||||| || |||||||| || || | || Sbjct 55976 CACGTTCTCGCCTTCTTTGCCGCGTCTGATGGCATTGTCAACGAGAACTTGGTCGAGCGC 55917 Query 125199 TTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGA 125256 ||| ||| || || ||||| |||| ||| ||||| ||||| ||||| || |||| Sbjct 55916 TTCAGCTC-CGAAGTGCAGATTCCCGAGG-CTCGCTGCTTCTACGGTTTCCAGATTATGA 55859 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC-- 125314 | |||||| | |||||||| | ||||| |||| |||| |||||| |||| || Sbjct 55858 TGGAGAACATCCACTCGGAGACATACTCGCTCTTGATCGACACGTACATCAGCGAGCCCA 55799 Query 125315 -GCAACGTAAACACATGCTCTTTAACGCAATCGACA 125349 ||| || || || ||||| ||||| || |||| Sbjct 55798 AGCAGCGCAACTAC---CTCTTCAACGCCATTGACA 55766 Score = 129 bits (142), Expect = 9e-25 Identities = 292/431 (68%), Gaps = 25/431 (6%) Strand=Plus/Minus Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || || || ||||| ||||| |||||||| || || ||| ||||||| |||||| Sbjct 55633 GCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCGTCCATCTTCTGGCTC 55574 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 |||||||| || || ||||| || ||||| | |||||| | || ||||| |||||| Sbjct 55573 AAGAAGCGTGGTCTGATGCCTGGTCTGACATTCTCCAACGAGCTCATCTCTCGCGACGAG 55514 Query 125553 GGCCTACACTGTGACTTTGCCATTCTACTGTT---TCGCAACTA-TCTGCGTCCCGAGTG 125608 ||| | ||| ||||||||| || || || || || | | || | |||| Sbjct 55513 GGCATGCACACCGACTTTGCCTGCCTGCTCTTCTCTCACATCAAGTCGAAG--CCGACCC 55456 Query 125609 CAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGA 125668 | || | | ||| ||| | |||||| ||| ||||| ||| || ||||| Sbjct 55455 CCGAGGC--TGTTGAGAAG------ATCATTGT---CGAGGCCGTCGAGATTGAGCAAGA 55407 Query 125669 GTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAG-CTAATGTGCG 125727 ||| || || || | || || || || | ||||||||| || | || |||||| Sbjct 55406 GTTCCTGACTGACGCTCTCCCCGTTGCTCTGCTCGGCATGAAC-GCTGGCCTCATGTGCC 55348 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGA---TTT 125784 ||||||| |||||||| || || || || ||| | | | ||||| ||||| | Sbjct 55347 AGTACATTGAGTTTGTTGCTGACCGCCTGCTG---GTGGCGCTTGGCAACAAGAAGCACT 55291 Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844 ||||| | | || ||||| || |||||| | ||| || || | || |||||||||| Sbjct 55290 ACAACTCTACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAACGGCAAGACCAACT 55231 Query 125845 TTTTCGAGAAG 125855 | ||||||||| Sbjct 55230 TCTTCGAGAAG 55220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741005954896480