Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1651 105 1e-18
seq3514 96.9 5e-16
>seq1651
Length=13254
Score = 105 bits (116), Expect = 1e-18
Identities = 85/100 (85%), Gaps = 2/100 (2%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||||| | || || ||||| || || ||||||||||| || |
Sbjct 11537 CGCCAAGCGTCACCGCAAGATCT-TGCGCGACAACATTCAGGGTATCACCAAGCCCGCCA 11595
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
|||||||||| |||||||||||||| ||||||||| ||||
Sbjct 11596 TCCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTC 11635
>seq3514
Length=6720
Score = 96.9 bits (106), Expect = 5e-16
Identities = 73/85 (86%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507
|||||| | || || |||||||| || ||||||||||| |||||||||||||| |||||
Sbjct 1036 AGATCT-TGCGTGACAACATCCAGGGTATCACCAAGCCCGCTATCCGTCGTCTTGCTCGC 978
Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTG 16532
||||| || ||||||||| ||||||
Sbjct 977 CGTGGCGGTGTCAAGCGTATCTCTG 953
Score = 84.2 bits (92), Expect = 3e-12
Identities = 117/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| || |||| |||| |||| | |||| ||||||| || || |||| ||| |
Sbjct 891 TGATCTACGAGGAGACCCGTGGTGTTCTCAAGACCTTCCTCGAGGGTGTCATCCGTGACG 832
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || ||| ||||||||||| || || ||||| |||||||| | || | ||||| |
Sbjct 831 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCGCTCGACGTTGTCTACG 772
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | || | |||||||||| | || || || || |||||
Sbjct 771 CCCTCAAGAGGCAAGGCCGTACCCTCTACGGCTTCGGTGGTTAA 728
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79069944563364
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |