Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1651 105 1e-18 seq3514 96.9 5e-16 >seq1651 Length=13254 Score = 105 bits (116), Expect = 1e-18 Identities = 85/100 (85%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||||| | || || ||||| || || ||||||||||| || | Sbjct 11537 CGCCAAGCGTCACCGCAAGATCT-TGCGCGACAACATTCAGGGTATCACCAAGCCCGCCA 11595 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 |||||||||| |||||||||||||| ||||||||| |||| Sbjct 11596 TCCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTC 11635 >seq3514 Length=6720 Score = 96.9 bits (106), Expect = 5e-16 Identities = 73/85 (86%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||||| | || || |||||||| || ||||||||||| |||||||||||||| ||||| Sbjct 1036 AGATCT-TGCGTGACAACATCCAGGGTATCACCAAGCCCGCTATCCGTCGTCTTGCTCGC 978 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||||| || ||||||||| |||||| Sbjct 977 CGTGGCGGTGTCAAGCGTATCTCTG 953 Score = 84.2 bits (92), Expect = 3e-12 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| |||| |||| | |||| ||||||| || || |||| ||| | Sbjct 891 TGATCTACGAGGAGACCCGTGGTGTTCTCAAGACCTTCCTCGAGGGTGTCATCCGTGACG 832 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| |||||||| | || | ||||| | Sbjct 831 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCGCTCGACGTTGTCTACG 772 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || | |||||||||| | || || || || ||||| Sbjct 771 CCCTCAAGAGGCAAGGCCGTACCCTCTACGGCTTCGGTGGTTAA 728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069944563364