Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq5249 149 8e-31
seq1666 98.7 1e-15
>seq5249
Length=10599
Score = 149 bits (164), Expect = 8e-31
Identities = 442/677 (65%), Gaps = 6/677 (1%)
Strand=Plus/Minus
Query 63183 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63242
|| ||||| | | ||| || |||| | || || || ||||| || |||||||||| |
Sbjct 7796 GGGCACATGAGAGTCCAATCGCCGTTTTGCTCGACACGCTTCATGAACAGATCAGGAACC 7737
Query 63243 CAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63301
|| || || || || || || | | | || || ||||| ||||| ||
Sbjct 7736 CACAGGGCGTAGAACAAG-TCGCGTGCGCGGACCTCTTCCTTTCCGTGGTTCTTGCGGAG 7678
Query 63302 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63361
|||||||| | | | || | ||||| || |||| ||| ||||| | | | |||||
Sbjct 7677 GTCGAGGAAGGGGAAGACGTCGGCGTGCCAAGGCTCCAGGTAGATGGCAAAAGCACCAGG 7618
Query 63362 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63421
|| ||||| || ||||| || | ||| | ||||||||| || || || | | ||| ||
Sbjct 7617 GCGCTTGTTGCCACCCTGGTCAACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGG 7558
Query 63422 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATT 63481
||| | ||||| || | || |||||||| | || ||| ||| | | ||| ||
Sbjct 7557 AATCAGGCCGTTGGAGGTGCCGTTGGTACCAGCAATGTAGGAGCCAGTTGAACGGATGCG 7498
Query 63482 ACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 63539
| |||| |||| ||||| || ||| | || || || | || || || |
Sbjct 7497 GTGGACGTTGA--GACCGATTCCACCGGCCGTCTTGGAAATCATGGCACAAGTCTTGAGG 7440
Query 63540 GTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT 63599
||||| ||||| ||||| ||||| || || |||||| | | || || | |
Sbjct 7439 GTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCGATCAAGAAGCATGATGCAAGC 7380
Query 63600 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63659
||| | || || || || || ||||| ||||||||||| ||||| | |||| |
Sbjct 7379 TGGGGCTTGGGGGTACCAGCGTTGAACAAGGTGGGAGAAGCGTGGGTAAAGTACTTTTGA 7320
Query 63660 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63719
|| | | |||||||| ||||| || || || | | || ||||| || |||
Sbjct 7319 GACATCAAGTTGTACGTTTCAATGGCCTTTTCAATGTTCTCGCCGTGGATTCCAACAGCG 7260
Query 63720 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAG 63779
|||||||| | ||||||||| |||||||| | | |||| | || | ||||||
Sbjct 7259 ACACGCATAATCATGTGCTGTGGTCTTTCGGCAACCTTGCCATCGATGCGGAGCAAGTAT 7200
Query 63780 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 63839
|| | || | || || || ||||| || | ||| ||||| || ||||| | ||
Sbjct 7199 GACCTCTCGAGCGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATG 7140
Query 63840 ACCGAGTTGAGTTTATC 63856
|||||||||| | |||
Sbjct 7139 GCCGAGTTGAGCTCATC 7123
>seq1666
Length=59928
Score = 98.7 bits (108), Expect = 1e-15
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363
|| || || ||| ||||| |||||||| | | || || |||||||| || || ||
Sbjct 55491 CAGGCAAAGTCGGTGTGCATGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAATGTCAGA 55550
Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423
|| ||||| || |||||||| || ||||| || ||||| ||||| || || ||||||
Sbjct 55551 CCAGGCATCAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAGGAGCCGCTGAAGAAG 55610
Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAG 33452
|| || || || ||||||||||| || ||
Sbjct 55611 ATACCCTCGACGGCAGCAAAGGCGATGAG 55639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622902441243680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |