Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5249 149 8e-31 seq1666 98.7 1e-15 >seq5249 Length=10599 Score = 149 bits (164), Expect = 8e-31 Identities = 442/677 (65%), Gaps = 6/677 (1%) Strand=Plus/Minus Query 63183 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63242 || ||||| | | ||| || |||| | || || || ||||| || |||||||||| | Sbjct 7796 GGGCACATGAGAGTCCAATCGCCGTTTTGCTCGACACGCTTCATGAACAGATCAGGAACC 7737 Query 63243 CAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63301 || || || || || || || | | | || || ||||| ||||| || Sbjct 7736 CACAGGGCGTAGAACAAG-TCGCGTGCGCGGACCTCTTCCTTTCCGTGGTTCTTGCGGAG 7678 Query 63302 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63361 |||||||| | | | || | ||||| || |||| ||| ||||| | | | ||||| Sbjct 7677 GTCGAGGAAGGGGAAGACGTCGGCGTGCCAAGGCTCCAGGTAGATGGCAAAAGCACCAGG 7618 Query 63362 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63421 || ||||| || ||||| || | ||| | ||||||||| || || || | | ||| || Sbjct 7617 GCGCTTGTTGCCACCCTGGTCAACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGG 7558 Query 63422 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATT 63481 ||| | ||||| || | || |||||||| | || ||| ||| | | ||| || Sbjct 7557 AATCAGGCCGTTGGAGGTGCCGTTGGTACCAGCAATGTAGGAGCCAGTTGAACGGATGCG 7498 Query 63482 ACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 63539 | |||| |||| ||||| || ||| | || || || | || || || | Sbjct 7497 GTGGACGTTGA--GACCGATTCCACCGGCCGTCTTGGAAATCATGGCACAAGTCTTGAGG 7440 Query 63540 GTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT 63599 ||||| ||||| ||||| ||||| || || |||||| | | || || | | Sbjct 7439 GTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCGATCAAGAAGCATGATGCAAGC 7380 Query 63600 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63659 ||| | || || || || || ||||| ||||||||||| ||||| | |||| | Sbjct 7379 TGGGGCTTGGGGGTACCAGCGTTGAACAAGGTGGGAGAAGCGTGGGTAAAGTACTTTTGA 7320 Query 63660 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63719 || | | |||||||| ||||| || || || | | || ||||| || ||| Sbjct 7319 GACATCAAGTTGTACGTTTCAATGGCCTTTTCAATGTTCTCGCCGTGGATTCCAACAGCG 7260 Query 63720 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAG 63779 |||||||| | ||||||||| |||||||| | | |||| | || | |||||| Sbjct 7259 ACACGCATAATCATGTGCTGTGGTCTTTCGGCAACCTTGCCATCGATGCGGAGCAAGTAT 7200 Query 63780 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 63839 || | || | || || || ||||| || | ||| ||||| || ||||| | || Sbjct 7199 GACCTCTCGAGCGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATG 7140 Query 63840 ACCGAGTTGAGTTTATC 63856 |||||||||| | ||| Sbjct 7139 GCCGAGTTGAGCTCATC 7123 >seq1666 Length=59928 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || ||| ||||| |||||||| | | || || |||||||| || || || Sbjct 55491 CAGGCAAAGTCGGTGTGCATGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAATGTCAGA 55550 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || |||||||| || ||||| || ||||| ||||| || || |||||| Sbjct 55551 CCAGGCATCAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAGGAGCCGCTGAAGAAG 55610 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAG 33452 || || || || ||||||||||| || || Sbjct 55611 ATACCCTCGACGGCAGCAAAGGCGATGAG 55639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622902441243680