Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq5249 185 8e-42 seq1666 147 2e-30 seq3589 122 8e-23 seq2758 107 2e-18 seq2177 96.9 3e-15 >seq5249 Length=10599 Score = 185 bits (204), Expect = 8e-42 Identities = 921/1443 (64%), Gaps = 54/1443 (4%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| || || ||||| || || | |||||||||| | || | ||| || ||| |||| Sbjct 8653 TTGACAACTTGGAACTCACCAGCGAGCACACGACGCGAGTAAATGTTGGAGGTGTAGGGC 8594 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 |||||| ||||||| ||| |||||||| |||| || || |||||| || || Sbjct 8593 TCAAAACACTCGTTGAAGCCAAGGATTTGGCTAGTCGAGGCAGTAGGCATGGGAGCAACA 8534 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | || ||||||| |||||| || || |||| || | |||| ||||| Sbjct 8533 AGCAAGCTGTTGCGCACGCCGTGTAGAGCAATCTCGCCCTTGAGAGCCTCCCAGTCCCAG 8474 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || || ||| || || |||||||||||| ||||| ||||||| ||| || Sbjct 8473 AGGTCTGTGGGCGTCTTGTTCCACATGTCGTATTGCAAGATGCCCTGAGAGGCCGGCGAA 8414 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCA--AGTTTTGGCGAGCTCGCAACTC---GCCTCCA 145352 |||| | || |||| || ||| | || || ||||| | || || || Sbjct 8413 CCTTCGTACGACGAGTAA--GCTCCATCCTTCTTAGCCAGCTC---AATCGAGGCAGTCA 8359 Query 145353 GAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCT 145412 | || ||| || || |||||| ||| || |||| ||| || | || || | Sbjct 8358 GGGCACCG-TGTAGATGGTCTCGAAAATCTGAATGTTAAGCTGCCTGGCCTCGGGAGAGT 8300 Query 145413 CGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGG 145472 || | | |||||| || | ||||||||||| || || | | || || | || | Sbjct 8299 CGAAAGCCATGCGGAGGGCGAGGAAAGCATCGGCAAGGCCGTTGACACCGACAGCAATCG 8240 Query 145473 GCCGATGTTTCATGTTGCTCATCCTCGCCGACTCG---ATAGGATATCGATTACGGTCGA 145529 | || || |||||||||| |||| || |||| | || || |||| ||||| Sbjct 8239 GGCGGTGGCGCATGTTGCTCTTCCTGGC---CTCGGGAACGGGGTAGTGATTGATGTCGA 8183 Query 145530 TAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGT--C 145587 | || || |||| ||| || | |||| || | | ||| ||| | |||| Sbjct 8182 TGATCTTGTTCAGGTTCTTGACAAGGACCTGGGTGACCTCGTGCAGCTTCTTGAAGTTGT 8123 Query 145588 AAAC-CGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAA 145646 | || | | |||| || || ||| || | | ||| | || ||||| || || | Sbjct 8122 AGACACCATTCTCGACATCG---ACAAAGGTGGGAAGGGCCAGGGAGGCCAAGTTGCAGA 8066 Query 145647 CTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGA 145706 | || ||| |||| | | |||| | || ||||| ||||| ||| | | Sbjct 8065 CAGCAACCTCGTCGGGGGCAGTGTACTCGACAATCTCACAGCACAGGTTGGAGCTGCGAA 8006 Query 145707 TGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACG 145766 |||| ||||| || | || || || || | |||||| |||||||||||||||||| | | Sbjct 8005 TGGTACCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATGAAGG 7946 Query 145767 GTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTG-----CAAGTCCTGCGCACG 145821 | ||| ||||| ||| | |||| |||| || | || | ||| || || Sbjct 7945 GGTTGCCGGTCTCGGTCTGAGCCTCC-----AAAATGGCGTACCACAGCTTCTGGGCGCG 7891 Query 145822 CACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGA 145881 | || | ||||| || ||||| || || |||||||||||| || Sbjct 7890 GATAGTCTCACGACCACGGCCTTCCCTCTCGTACCTCTCATACAGCTCCTCAAACTCGTC 7831 Query 145882 ACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTT 145941 |||||| ||||| || || || || || || ||||| || | ||| ||||||| Sbjct 7830 GCCGTAGACATCGGCGAGACCCGGGGCCTCGTGAGGGCACATGAGAGTCCAATCGCCGTT 7771 Query 145942 GGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGC 146001 | ||| |||| ||| |||| ||| || |||||||| ||||| | ||||||||| || Sbjct 7770 TTGCTCGACACGCTTCATGAACAGATCAGGAACCCACAGGGCGTAGAACAAGTCGCGTGC 7711 Query 146002 TTTGCAATCCTCAGC--ACCCATGTTTC--GCTTCAAATTAAGCACACTATAGATGTCCG 146057 || |||| | || || ||| || | | || | ||| ||| | Sbjct 7710 ---GCGGACCTCTTCCTTTCCGTGGTTCTTGC-GGAGGTCGAGGAAGGGGAAGACGTCGG 7655 Query 146058 CGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCA 146114 ||||||| || || | |||| ||| | || || || |||||||||||||| | Sbjct 7654 CGTGCCAAGGCTCCAGGTAGATGGCAAAAGCACCAGGGCGCTTGTTGCCACCCTGGTCAA 7595 Query 146115 CGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGT 146174 ||| || | ||||||| |||| || | |||||| | |||| ||| ||||| Sbjct 7594 CGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGGAATCAGGCCGTTGGAGGTGCCGT 7535 Query 146175 TCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGC 146234 | ||| || || ||| || || | || || || || | |||| || | Sbjct 7534 TGGTACCAGCAATGTAGGAGCCAGTTGAACGGATGCGGTGGACGTTGAGACCGATTCCAC 7475 Query 146235 C-GCCGTACTTGGATATAGCGGCGC-AGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCT 146292 | ||||| |||||| || ||| | |||| ||| || ||||||||||| || ||||| Sbjct 7474 CGGCCGT-CTTGGAAATCATGGCACAAGTC-TTGAGGGTGTCGTAGATGCCCTCGATGCT 7417 Query 146293 ATC--GCTTCGAATGCCGAGCAGAAAGCACGA-GCACATCTGCGCCATCGGCGTCCCCGC 146349 || |||| ||| ||| || ||||| || ||| | ||| | | | || || || || Sbjct 7416 GTCCTCCTTC--ATGTCGATCAAGAAGCATGATGCA-AGCTGGGGCTTGGGGGTACCAGC 7360 Query 146350 CGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTC 146409 |||||| || || ||||| ||||| ||| | ||||| |||||||| Sbjct 7359 GTTGAACAAGGTGGGAGAAGCGTGGGTAAAGTACTTTTGAGACATCAAGTTGTACGTTTC 7300 Query 146410 GATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTG 146469 || || | || ||||| ||||| || || || | |||||| ||||| | |||||| || Sbjct 7299 AATGGCCTTTTCAATGTTCTCGCCGTGGATTCCAACAGCGACACGCATAATCATGTGCTG 7240 Query 146470 GGG 146472 || Sbjct 7239 TGG 7237 >seq1666 Length=59928 Score = 147 bits (162), Expect = 2e-30 Identities = 341/505 (68%), Gaps = 17/505 (3%) Strand=Plus/Minus Query 46099 AAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGT 46158 ||||| |||||||||| || |||||| | || | | |||| || || |||| Sbjct 55699 AAGAAGGCCGACTGGGCTCTGCGCTGGATCTGCGACAAGAACTCGACCTTTGCATCGCGT 55640 Query 46159 ATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTT 46218 | | |||||||| || ||||| |||| || ||| || || ||||||| Sbjct 55639 CTCATCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCGTCCATCTTC 55580 Query 46219 TACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCG 46277 | |||| || | || | | ||||| || ||||| || ||||||||| || || || Sbjct 55579 TGGCTCAAGAAGCGTGGTC-TGATGCCTGGTCTGACATTCTCCAACGAGCTCATCTCTCG 55521 Query 46278 CGACGAGGGCCTGCATACGGACTTTGCGTGTCT---CTACTATAACACTCGCGTGCACGA 46334 |||||||||| |||| || |||||||| || || || || | ||| || || ||| Sbjct 55520 CGACGAGGGCATGCACACCGACTTTGCCTGCCTGCTCTTCTCTCACA-TCAAGT---CGA 55465 Query 46335 CAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGG---AGGCGGTGGCCATTGAGAA 46391 ||| | ||||| | || |||| | | ||| | |||| || | |||||| | Sbjct 55464 --AGCCGACCCCCGAGGCTGT--TGAGAA-GATCATTGTCGAGGCCGTCGAGATTGAGCA 55410 Query 46392 GGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAATGTG 46451 ||||| | || | ||| || |||| ||| ||||| ||||||||||| ||||| Sbjct 55409 AGAGTTCCTGACTGACGCTCTCCCCGTTGCTCTGCTCGGCATGAACGCTGGCCTCATGTG 55350 Query 46452 CGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTT 46511 | | ||||| |||||||| || ||||| ||||| ||| |||| | | |||||| | Sbjct 55349 CCAGTACATTGAGTTTGTTGCTGACCGCCTGCTGGTGGCGCTTGGCAACAAGAAGCACTA 55290 Query 46512 TCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTT 46571 || | ||| || || || || ||| | ||||| || || | ||||| || || || Sbjct 55289 CAACTCTACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAACGGCAAGACCAACTT 55230 Query 46572 TTTCGAAAAGCGCGTCGGCGAGTAT 46596 ||||| |||||||| || || ||| Sbjct 55229 CTTCGAGAAGCGCGTTGGTGACTAT 55205 >seq3589 Length=6346 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | ||| ||||||||||| |||||||| || | Sbjct 3212 CCACCACGGAGACGAAGCACCAAGTGCAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCC 3271 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | |||||| |||||||||||||| | || | |||||||| || || ||| Sbjct 3272 AACGTTCTGCCGTCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGATCGGGCGGG 3331 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||||| | || | || || | ||||||| Sbjct 3332 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATCGTGTCTGACGACTCGACT 3391 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || ||||| | ||| || ||||| |||||||| Sbjct 3392 TCAAGCGTAATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3438 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| ||||| || || | ||| || ||||| ||||||||||| ||| Sbjct 3440 CCACCGCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGCA 3499 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| || |||||||| ||| |||| || ||||||||||| || ||| Sbjct 3500 AGGGTGCGACCGTCCTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGG 3559 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || || || ||||| | || | || |||| || |||| Sbjct 3560 ATGCCCTCCTTATCCTGAATCTTGGACTTGACATTGTCGATGGTGTCGGACGATTCGACT 3619 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| ||| | ||| || || || Sbjct 3620 TCGAGGGTGATGGTCTTGCCAGT 3642 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| ||||| || || | || |||||||| || |||||||| ||| | Sbjct 2984 CCACCGCGGAGACGGAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCC 3043 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| ||||||||||| ||| | || | |||||||||||||| || Sbjct 3044 AACGTCCGGCCATCCTCAAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 3103 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | ||||| | ||||| | Sbjct 3104 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATCGTATCCGAAGACTCCACC 3163 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || ||||| | || || ||||| |||||||| Sbjct 3164 TCAAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3210 Score = 96.9 bits (106), Expect = 3e-15 Identities = 126/173 (73%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 ||||||||||| || |||||||| ||| | |||||| ||||| ||||||||||| Sbjct 3749 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 3808 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| | |||||||| ||| || ||||| || || ||||| ||| || |||| Sbjct 3809 GCGAAGATGAGACGCTGCT-GTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 3867 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGT 131210 | | || | || |||| |||||||| || | ||| | ||| || || || Sbjct 3868 ACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCAGT 3920 >seq2758 Length=2532 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| |||||||| | || | ||||||||||| || |||||||| ||| | Sbjct 1689 CCGCCGCGCAGGCGCAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1630 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || ||| Sbjct 1629 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 1570 Query 131128 ATTCCTTCTTTGTCGGT 131144 || || || ||||| || Sbjct 1569 ATGCCCTCCTTGTCTGT 1553 >seq2177 Length=34801 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| | |||||| |||||| ||||||||||| ||| ||| Sbjct 6204 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 6145 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | |||||||||||||| || || || || ||||| ||| || ||||| | | Sbjct 6144 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 6085 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || || | |||||| | |||| ||| | ||| || || || || || || |||| Sbjct 6084 CGATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGA 6025 Query 131225 A 131225 | Sbjct 6024 A 6024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471978885880320