Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq5249 185 8e-42
seq1666 147 2e-30
seq3589 122 8e-23
seq2758 107 2e-18
seq2177 96.9 3e-15
>seq5249
Length=10599
Score = 185 bits (204), Expect = 8e-42
Identities = 921/1443 (64%), Gaps = 54/1443 (4%)
Strand=Plus/Minus
Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117
||||| || || ||||| || || | |||||||||| | || | ||| || ||| ||||
Sbjct 8653 TTGACAACTTGGAACTCACCAGCGAGCACACGACGCGAGTAAATGTTGGAGGTGTAGGGC 8594
Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177
|||||| ||||||| ||| |||||||| |||| || || |||||| || ||
Sbjct 8593 TCAAAACACTCGTTGAAGCCAAGGATTTGGCTAGTCGAGGCAGTAGGCATGGGAGCAACA 8534
Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237
| || ||||||| |||||| || || |||| || | |||| |||||
Sbjct 8533 AGCAAGCTGTTGCGCACGCCGTGTAGAGCAATCTCGCCCTTGAGAGCCTCCCAGTCCCAG 8474
Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297
|| || ||| || || |||||||||||| ||||| ||||||| ||| ||
Sbjct 8473 AGGTCTGTGGGCGTCTTGTTCCACATGTCGTATTGCAAGATGCCCTGAGAGGCCGGCGAA 8414
Query 145298 CCTTGAAAGGAACTGTAACTGCCCCA--AGTTTTGGCGAGCTCGCAACTC---GCCTCCA 145352
|||| | || |||| || ||| | || || ||||| | || || ||
Sbjct 8413 CCTTCGTACGACGAGTAA--GCTCCATCCTTCTTAGCCAGCTC---AATCGAGGCAGTCA 8359
Query 145353 GAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCT 145412
| || ||| || || |||||| ||| || |||| ||| || | || || |
Sbjct 8358 GGGCACCG-TGTAGATGGTCTCGAAAATCTGAATGTTAAGCTGCCTGGCCTCGGGAGAGT 8300
Query 145413 CGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGG 145472
|| | | |||||| || | ||||||||||| || || | | || || | || |
Sbjct 8299 CGAAAGCCATGCGGAGGGCGAGGAAAGCATCGGCAAGGCCGTTGACACCGACAGCAATCG 8240
Query 145473 GCCGATGTTTCATGTTGCTCATCCTCGCCGACTCG---ATAGGATATCGATTACGGTCGA 145529
| || || |||||||||| |||| || |||| | || || |||| |||||
Sbjct 8239 GGCGGTGGCGCATGTTGCTCTTCCTGGC---CTCGGGAACGGGGTAGTGATTGATGTCGA 8183
Query 145530 TAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGT--C 145587
| || || |||| ||| || | |||| || | | ||| ||| | ||||
Sbjct 8182 TGATCTTGTTCAGGTTCTTGACAAGGACCTGGGTGACCTCGTGCAGCTTCTTGAAGTTGT 8123
Query 145588 AAAC-CGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAA 145646
| || | | |||| || || ||| || | | ||| | || ||||| || || |
Sbjct 8122 AGACACCATTCTCGACATCG---ACAAAGGTGGGAAGGGCCAGGGAGGCCAAGTTGCAGA 8066
Query 145647 CTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGA 145706
| || ||| |||| | | |||| | || ||||| ||||| ||| | |
Sbjct 8065 CAGCAACCTCGTCGGGGGCAGTGTACTCGACAATCTCACAGCACAGGTTGGAGCTGCGAA 8006
Query 145707 TGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACG 145766
|||| ||||| || | || || || || | |||||| |||||||||||||||||| | |
Sbjct 8005 TGGTACCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATGAAGG 7946
Query 145767 GTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTG-----CAAGTCCTGCGCACG 145821
| ||| ||||| ||| | |||| |||| || | || | ||| || ||
Sbjct 7945 GGTTGCCGGTCTCGGTCTGAGCCTCC-----AAAATGGCGTACCACAGCTTCTGGGCGCG 7891
Query 145822 CACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGA 145881
| || | ||||| || ||||| || || |||||||||||| ||
Sbjct 7890 GATAGTCTCACGACCACGGCCTTCCCTCTCGTACCTCTCATACAGCTCCTCAAACTCGTC 7831
Query 145882 ACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTT 145941
|||||| ||||| || || || || || || ||||| || | ||| |||||||
Sbjct 7830 GCCGTAGACATCGGCGAGACCCGGGGCCTCGTGAGGGCACATGAGAGTCCAATCGCCGTT 7771
Query 145942 GGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGC 146001
| ||| |||| ||| |||| ||| || |||||||| ||||| | ||||||||| ||
Sbjct 7770 TTGCTCGACACGCTTCATGAACAGATCAGGAACCCACAGGGCGTAGAACAAGTCGCGTGC 7711
Query 146002 TTTGCAATCCTCAGC--ACCCATGTTTC--GCTTCAAATTAAGCACACTATAGATGTCCG 146057
|| |||| | || || ||| || | | || | ||| ||| |
Sbjct 7710 ---GCGGACCTCTTCCTTTCCGTGGTTCTTGC-GGAGGTCGAGGAAGGGGAAGACGTCGG 7655
Query 146058 CGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCA 146114
||||||| || || | |||| ||| | || || || |||||||||||||| |
Sbjct 7654 CGTGCCAAGGCTCCAGGTAGATGGCAAAAGCACCAGGGCGCTTGTTGCCACCCTGGTCAA 7595
Query 146115 CGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGT 146174
||| || | ||||||| |||| || | |||||| | |||| ||| |||||
Sbjct 7594 CGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGGAATCAGGCCGTTGGAGGTGCCGT 7535
Query 146175 TCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGC 146234
| ||| || || ||| || || | || || || || | |||| || |
Sbjct 7534 TGGTACCAGCAATGTAGGAGCCAGTTGAACGGATGCGGTGGACGTTGAGACCGATTCCAC 7475
Query 146235 C-GCCGTACTTGGATATAGCGGCGC-AGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCT 146292
| ||||| |||||| || ||| | |||| ||| || ||||||||||| || |||||
Sbjct 7474 CGGCCGT-CTTGGAAATCATGGCACAAGTC-TTGAGGGTGTCGTAGATGCCCTCGATGCT 7417
Query 146293 ATC--GCTTCGAATGCCGAGCAGAAAGCACGA-GCACATCTGCGCCATCGGCGTCCCCGC 146349
|| |||| ||| ||| || ||||| || ||| | ||| | | | || || || ||
Sbjct 7416 GTCCTCCTTC--ATGTCGATCAAGAAGCATGATGCA-AGCTGGGGCTTGGGGGTACCAGC 7360
Query 146350 CGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTC 146409
|||||| || || ||||| ||||| ||| | ||||| ||||||||
Sbjct 7359 GTTGAACAAGGTGGGAGAAGCGTGGGTAAAGTACTTTTGAGACATCAAGTTGTACGTTTC 7300
Query 146410 GATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTG 146469
|| || | || ||||| ||||| || || || | |||||| ||||| | |||||| ||
Sbjct 7299 AATGGCCTTTTCAATGTTCTCGCCGTGGATTCCAACAGCGACACGCATAATCATGTGCTG 7240
Query 146470 GGG 146472
||
Sbjct 7239 TGG 7237
>seq1666
Length=59928
Score = 147 bits (162), Expect = 2e-30
Identities = 341/505 (68%), Gaps = 17/505 (3%)
Strand=Plus/Minus
Query 46099 AAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGT 46158
||||| |||||||||| || |||||| | || | | |||| || || ||||
Sbjct 55699 AAGAAGGCCGACTGGGCTCTGCGCTGGATCTGCGACAAGAACTCGACCTTTGCATCGCGT 55640
Query 46159 ATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTT 46218
| | |||||||| || ||||| |||| || ||| || || |||||||
Sbjct 55639 CTCATCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCGTCCATCTTC 55580
Query 46219 TACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCG 46277
| |||| || | || | | ||||| || ||||| || ||||||||| || || ||
Sbjct 55579 TGGCTCAAGAAGCGTGGTC-TGATGCCTGGTCTGACATTCTCCAACGAGCTCATCTCTCG 55521
Query 46278 CGACGAGGGCCTGCATACGGACTTTGCGTGTCT---CTACTATAACACTCGCGTGCACGA 46334
|||||||||| |||| || |||||||| || || || || | ||| || || |||
Sbjct 55520 CGACGAGGGCATGCACACCGACTTTGCCTGCCTGCTCTTCTCTCACA-TCAAGT---CGA 55465
Query 46335 CAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGG---AGGCGGTGGCCATTGAGAA 46391
||| | ||||| | || |||| | | ||| | |||| || | |||||| |
Sbjct 55464 --AGCCGACCCCCGAGGCTGT--TGAGAA-GATCATTGTCGAGGCCGTCGAGATTGAGCA 55410
Query 46392 GGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAATGTG 46451
||||| | || | ||| || |||| ||| ||||| ||||||||||| |||||
Sbjct 55409 AGAGTTCCTGACTGACGCTCTCCCCGTTGCTCTGCTCGGCATGAACGCTGGCCTCATGTG 55350
Query 46452 CGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTT 46511
| | ||||| |||||||| || ||||| ||||| ||| |||| | | |||||| |
Sbjct 55349 CCAGTACATTGAGTTTGTTGCTGACCGCCTGCTGGTGGCGCTTGGCAACAAGAAGCACTA 55290
Query 46512 TCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTT 46571
|| | ||| || || || || ||| | ||||| || || | ||||| || || ||
Sbjct 55289 CAACTCTACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAACGGCAAGACCAACTT 55230
Query 46572 TTTCGAAAAGCGCGTCGGCGAGTAT 46596
||||| |||||||| || || |||
Sbjct 55229 CTTCGAGAAGCGCGTTGGTGACTAT 55205
>seq3589
Length=6346
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| ||||| || || | ||| ||||||||||| |||||||| || |
Sbjct 3212 CCACCACGGAGACGAAGCACCAAGTGCAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCC 3271
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || | |||||| |||||||||||||| | || | |||||||| || || |||
Sbjct 3272 AACGTTCTGCCGTCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGATCGGGCGGG 3331
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| ||| ||||| | || | || || | |||||||
Sbjct 3332 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATCGTGTCTGACGACTCGACT 3391
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | |||| ||| || ||||| | ||| || ||||| ||||||||
Sbjct 3392 TCAAGCGTAATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3438
Score = 109 bits (120), Expect = 5e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||| | ||| ||||| || || | ||| || ||||| ||||||||||| |||
Sbjct 3440 CCACCGCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGCA 3499
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| |||||| || |||||||| ||| |||| || ||||||||||| || |||
Sbjct 3500 AGGGTGCGACCGTCCTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGG 3559
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || || || || || ||||| | || | || |||| || ||||
Sbjct 3560 ATGCCCTCCTTATCCTGAATCTTGGACTTGACATTGTCGATGGTGTCGGACGATTCGACT 3619
Query 131188 TCGACGGTAACGGTTTTACCGGT 131210
|||| ||| | ||| || || ||
Sbjct 3620 TCGAGGGTGATGGTCTTGCCAGT 3642
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|||||||| | ||| ||||| || || | || |||||||| || |||||||| ||| |
Sbjct 2984 CCACCGCGGAGACGGAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCC 3043
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || ||||| ||||||||||| ||| | || | |||||||||||||| ||
Sbjct 3044 AACGTCCGGCCATCCTCAAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 3103
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| || || ||||| | || | ||||| | ||||| |
Sbjct 3104 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATCGTATCCGAAGACTCCACC 3163
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | |||| || || ||||| | || || ||||| ||||||||
Sbjct 3164 TCAAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3210
Score = 96.9 bits (106), Expect = 3e-15
Identities = 126/173 (73%), Gaps = 1/173 (1%)
Strand=Plus/Plus
Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097
||||||||||| || |||||||| ||| | |||||| ||||| |||||||||||
Sbjct 3749 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 3808
Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157
||| |||| | |||||||| ||| || ||||| || || ||||| ||| || ||||
Sbjct 3809 GCGAAGATGAGACGCTGCT-GTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 3867
Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGT 131210
| | || | || |||| |||||||| || | ||| | ||| || || ||
Sbjct 3868 ACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCAGT 3920
>seq2758
Length=2532
Score = 107 bits (118), Expect = 2e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| ||||||| |||||||| | || | ||||||||||| || |||||||| ||| |
Sbjct 1689 CCGCCGCGCAGGCGCAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1630
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || |||
Sbjct 1629 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 1570
Query 131128 ATTCCTTCTTTGTCGGT 131144
|| || || ||||| ||
Sbjct 1569 ATGCCCTCCTTGTCTGT 1553
>seq2177
Length=34801
Score = 96.9 bits (106), Expect = 3e-15
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104
|||| || |||||||| ||| | |||||| |||||| ||||||||||| ||| |||
Sbjct 6204 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 6145
Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164
| | |||||||||||||| || || || || ||||| ||| || ||||| | |
Sbjct 6144 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 6085
Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
| | || || | |||||| | |||| ||| | ||| || || || || || || ||||
Sbjct 6084 CGATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGA 6025
Query 131225 A 131225
|
Sbjct 6024 A 6024
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471978885880320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |