Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq3589 105 6e-18
seq2177 93.3 4e-14
seq2758 84.2 2e-11
>seq3589
Length=6346
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || || ||||| || ||| | || ||||| ||||| | |
Sbjct 3210 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATTACGCTTGAGGTGGAGTCTTCG 3151
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | ||| | |||| || ||||| ||||||||||| ||||| || || ||
Sbjct 3150 GATACGATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAG 3091
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || || ||||| ||| | |||||| ||| || | |||| ||||||
Sbjct 3090 CAGCGCCTGATTTTCGCGGGCAAGCAGCTTGAGGATGGCCGGACGTTGGCCGACTACAAC 3031
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || ||||| | || || || | || | ||||| |||
Sbjct 3030 ATCCAGAAGGAGTCCACTCTGCACTTGGTGCTCCGTCTCCGCGGTGGT 2983
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || ||||| ||||| || || | || |||||||| || | |
Sbjct 3438 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACCATTACGCTTGAAGTCGAGTCGTCA 3379
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| | |||| || || ||||||||||||||||| || ||||||||
Sbjct 3378 GACACGATTGACAACGTCAAGTCGAAGATCCAAGACAAGGAGGGTATCCCGCCCGATCAG 3319
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || ||||| ||||| ||| | ||||| | | || | | || ||||||
Sbjct 3318 CAGCGCCTGATTTTTGCAGGCAAGCAGCTCGAGGACGGCAGAACGTTGGCAGACTACAAC 3259
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427
|| ||||| || || ||| | || || ||
Sbjct 3258 ATCCAAAAGGAGTCAACCCTGCACTTGGT 3230
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || |||| || ||||| ||| | |||| ||| | ||| || ||||
Sbjct 3642 ACTGGCAAGACCATCACCCTCGAAGTCGAATCGTCCGACACCATCGACAATGTCAAGTCC 3583
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| || |||||||| || || || || || || || | || || ||||||||
Sbjct 3582 AAGATTCAGGATAAGGAGGGCATCCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAG 3523
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
|| | ||||| |||||| | |||| ||||||||||| || ||||||||| | ||
Sbjct 3522 CAACTCGAGGACGGTCGCACCCTTGCCGACTACAACATTCAGAAGGAATCCACCCTCCAC 3463
Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446
|| || | || | ||||| |||
Sbjct 3462 TTGGTGCTCCGTCTCCGCGGTGGT 3439
Score = 93.3 bits (102), Expect = 4e-14
Identities = 125/173 (72%), Gaps = 1/173 (1%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || |||| ||||| || || || |||| ||| | ||| | ||||
Sbjct 3920 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAACGTCAAGTCC 3861
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| || || || || || || ||||| || || || |||||
Sbjct 3860 AAGATCCAGGACAAGGAGGGCATCCCCCCTGA-CAGCAGCGTCTCATCTTCGCTGGCAAG 3802
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415
||| | |||||| ||||||| || |||| |||||||| || || || || ||
Sbjct 3801 CAGCTTGAGGATGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCGAC 3749
>seq2177
Length=34801
Score = 93.3 bits (102), Expect = 4e-14
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || |||| || || || || || | || ||| | ||| || ||||
Sbjct 6039 ACGGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGACACCATCGACAATGTCAAGTCC 6098
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| ||||| || || || || || || || || ||||||||
Sbjct 6099 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 6158
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
||| | ||||| ||||||| ||||||| |||||||| || ||
Sbjct 6159 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAA 6202
>seq2758
Length=2532
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370
|||||||||||| || || ||||| || || || || || || |||||||| ||| | ||
Sbjct 1555 AGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGA 1614
Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTT 22430
||| |||||| | ||||| |||||||| || || || || || | || | || |
Sbjct 1615 GGACGGCCGCACGCTGTCCGACTACAACATCCAGAAGGAGTCGACGCTCCACCTGGTGCT 1674
Query 22431 GCGATTGCGCGGAGGT 22446
||| ||||||| |||
Sbjct 1675 GCGCCTGCGCGGCGGT 1690
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419698596479620
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |