Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1666 123 5e-23 seq4148 98.7 2e-15 seq3539 95.1 2e-14 >seq1666 Length=59928 Score = 123 bits (136), Expect = 5e-23 Identities = 271/402 (67%), Gaps = 8/402 (2%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || || || ||||||||||||||||||||| || Sbjct 55224 TCGAAGAAGTTGGTCTTGCCGTTGAGCGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTA 55283 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | |||||| || || | | |||||| || |||||||| | Sbjct 55284 GAGTTGTAGTGCTTCTTGTTGCCAAGCGCCACCAGCAGGCGGTCAGCAACAAACTCAATG 55343 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | ||| || ||| ||||||||| | || | | || | || ||| | | Sbjct 55344 TACTGGCACATGAGGCCAGCGTTCATGCCGAGCAGAGCAACGGGGAGAGCGTCAGTCAGG 55403 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCC---AGAGAC 251799 || || | || | | || | |||| ||||| |||| | ||| | | | Sbjct 55404 AACTCTTGCTCAATCTCGACGG---CCTCGACAATGATCTTCTCAACAGCCTCGGGGGTC 55460 Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCG 251859 |||| || | | ||| | || || | |||| | ||||| ||||||||| Sbjct 55461 GGCTTCGACTTGATGTGAGAGAAGAGCAGGCAGGCAAAGTCGGTGTGCATGCCCTCGTCG 55520 Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919 ||| ||||| ||||||||| | ||| |||||||||| ||||| ||| |||||||| Sbjct 55521 CGAGAGATGAGCTCGTTGGAGAATGTCAGACCAGGCATCAGACCACGCTTCTTGAGCCAG 55580 Query 251920 AAGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960 ||||| | ||| ||||| || ||| | | ||||||||| Sbjct 55581 AAGATGGACGC-GAAGGAGCCGCTGAAGAAGATACCCTCGAC 55621 >seq4148 Length=54710 Score = 98.7 bits (108), Expect = 2e-15 Identities = 166/240 (69%), Gaps = 3/240 (1%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || ||||| || |||||||||||||||||||| ||||| |||| ||||| | || Sbjct 26008 GTCGGCTCTCTTTCTGGTGGTTGGAAGATGAAGCTCGCCCTTGCTCGTGCCATGTTGATG 25949 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 || ||||| ||| | ||||||| || || || |||||| ||||| | ||| | ||| Sbjct 25948 CGCGCCGACGTCTTCTTGCTTGACGAACCGACTAACCACTTGGACGTTGCAAACATTGCC 25889 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | ||||| | || | | | || | | | || || || |||||| Sbjct 25888 TGGCTCGAGGAGTACCTCAAGAGCCACACCGAGATTACCAGCTTGATCGTGTCCCACGAC 25829 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTC 279935 || || ||| | || ||||| || | | ||| ||||| ||| | || ||||||| Sbjct 25828 TCGGGTTTCTTGGACGCCGTCTGTACCGACATTTACCACTACGAGAACAA---GAAGCTC 25772 >seq3539 Length=3624 Score = 95.1 bits (104), Expect = 2e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || |||| |||||||| ||||| ||||| || |||||||| || |||| ||||| Sbjct 2512 CTCCCGTATTGCCGTCATTGGTCCCAACGGTGCCGGAAAGTCTACGCTGGTCAACGTCCT 2571 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 |||||| ||| | |||| | || || | |||| ||||| || || || Sbjct 2572 GACTGGTGAGCTCATCCCCACCGCTGGTGAGGTCTACCAGCACGAGAACATCCGTATCGC 2631 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||||||| |||||| || |||| || |||| |||||| | | Sbjct 2632 CTACATCAAGCAGCACGCTTTCGCCCACATTGACCACCATCTCGACAAGACTCCCTCCGA 2691 Query 280340 ATACATTCAGTGGCG 280354 ||||| || ||||| Sbjct 2692 GTACATCCAATGGCG 2706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027761103674068