Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq1666 123 5e-23
seq4148 98.7 2e-15
seq3539 95.1 2e-14
>seq1666
Length=59928
Score = 123 bits (136), Expect = 5e-23
Identities = 271/402 (67%), Gaps = 8/402 (2%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| | || || || ||||||||||||||||||||| ||
Sbjct 55224 TCGAAGAAGTTGGTCTTGCCGTTGAGCGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTA 55283
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
| ||||| ||||| | |||||| || || | | |||||| || |||||||| |
Sbjct 55284 GAGTTGTAGTGCTTCTTGTTGCCAAGCGCCACCAGCAGGCGGTCAGCAACAAACTCAATG 55343
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
||||| | ||| || ||| ||||||||| | || | | || | || ||| | |
Sbjct 55344 TACTGGCACATGAGGCCAGCGTTCATGCCGAGCAGAGCAACGGGGAGAGCGTCAGTCAGG 55403
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCC---AGAGAC 251799
|| || | || | | || | |||| ||||| |||| | ||| | | |
Sbjct 55404 AACTCTTGCTCAATCTCGACGG---CCTCGACAATGATCTTCTCAACAGCCTCGGGGGTC 55460
Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCG 251859
|||| || | | ||| | || || | |||| | ||||| |||||||||
Sbjct 55461 GGCTTCGACTTGATGTGAGAGAAGAGCAGGCAGGCAAAGTCGGTGTGCATGCCCTCGTCG 55520
Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919
||| ||||| ||||||||| | ||| |||||||||| ||||| ||| ||||||||
Sbjct 55521 CGAGAGATGAGCTCGTTGGAGAATGTCAGACCAGGCATCAGACCACGCTTCTTGAGCCAG 55580
Query 251920 AAGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960
||||| | ||| ||||| || ||| | | |||||||||
Sbjct 55581 AAGATGGACGC-GAAGGAGCCGCTGAAGAAGATACCCTCGAC 55621
>seq4148
Length=54710
Score = 98.7 bits (108), Expect = 2e-15
Identities = 166/240 (69%), Gaps = 3/240 (1%)
Strand=Plus/Minus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| || ||||| || |||||||||||||||||||| ||||| |||| ||||| | ||
Sbjct 26008 GTCGGCTCTCTTTCTGGTGGTTGGAAGATGAAGCTCGCCCTTGCTCGTGCCATGTTGATG 25949
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
|| ||||| ||| | ||||||| || || || |||||| ||||| | ||| | |||
Sbjct 25948 CGCGCCGACGTCTTCTTGCTTGACGAACCGACTAACCACTTGGACGTTGCAAACATTGCC 25889
Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875
||||| | | ||||| | || | | | || | | | || || || ||||||
Sbjct 25888 TGGCTCGAGGAGTACCTCAAGAGCCACACCGAGATTACCAGCTTGATCGTGTCCCACGAC 25829
Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTC 279935
|| || ||| | || ||||| || | | ||| ||||| ||| | || |||||||
Sbjct 25828 TCGGGTTTCTTGGACGCCGTCTGTACCGACATTTACCACTACGAGAACAA---GAAGCTC 25772
>seq3539
Length=3624
Score = 95.1 bits (104), Expect = 2e-14
Identities = 138/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219
||| || |||| |||||||| ||||| ||||| || |||||||| || |||| |||||
Sbjct 2512 CTCCCGTATTGCCGTCATTGGTCCCAACGGTGCCGGAAAGTCTACGCTGGTCAACGTCCT 2571
Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279
|||||| ||| | |||| | || || | |||| ||||| || || ||
Sbjct 2572 GACTGGTGAGCTCATCCCCACCGCTGGTGAGGTCTACCAGCACGAGAACATCCGTATCGC 2631
Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339
||| || |||||||||||| |||||| || |||| || |||| |||||| | |
Sbjct 2632 CTACATCAAGCAGCACGCTTTCGCCCACATTGACCACCATCTCGACAAGACTCCCTCCGA 2691
Query 280340 ATACATTCAGTGGCG 280354
||||| || |||||
Sbjct 2692 GTACATCCAATGGCG 2706
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027761103674068
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |