Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq3589 152 9e-32
seq2177 143 5e-29
seq3539 95.1 2e-14
>seq3589
Length=6346
Score = 152 bits (168), Expect = 9e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| || || | |||||||| || |||||||| || |||||||| || ||||
Sbjct 2984 CCACCGCGGAGACGGAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCC 3043
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| |||| ||||| || | |||||| || ||||| || || | || ||||| || |||
Sbjct 3044 AACGTCCGGCCATCCTCAAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 3103
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| | ||||||| ||||| || || | || || ||
Sbjct 3104 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATCGTATCCGAAGACTCCACC 3163
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | || || || || || || | |||||||||||| ||||||||
Sbjct 3164 TCAAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3210
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| || || ||||| ||||||||||| || || |
Sbjct 3212 CCACCACGGAGACGAAGCACCAAGTGCAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCC 3271
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || || || || || | |||||| || || || || || | || || ||||| ||
Sbjct 3272 AACGTTCTGCCGTCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGATCGGGCGGG 3331
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||||||||| ||||| | ||||||| || || ||||||| || || |||
Sbjct 3332 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATCGTGTCTGACGACTCGACT 3391
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | || ||||| || || || | ||||||||||| ||||||||
Sbjct 3392 TCAAGCGTAATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3438
Score = 132 bits (146), Expect = 9e-26
Identities = 153/205 (75%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | || | ||| ||||| ||||| || |||||||| || |||| |
Sbjct 3719 CCGCCACGCAGGCGAAGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 3778
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || ||||| ||||| | || || || || ||
Sbjct 3779 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTG-TCAGGGGGG 3837
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | ||||||| ||||||||||| | || || ||
Sbjct 3838 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGACC 3897
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439
|| | ||||||||| || || ||||
Sbjct 3898 TCAAGGGTGATGGTCTTGCCAGTGA 3922
Score = 127 bits (140), Expect = 4e-24
Identities = 151/205 (74%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| || || | |||||||| || ||||| || || || ||||| || ||||
Sbjct 3440 CCACCGCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGCA 3499
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | ||||| |||||||| || | | || ||||| || ||
Sbjct 3500 AGGGTGCGACCGTCCTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGG 3559
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||| || |||||||| | |||||| ||||||||||| | ||||| |||
Sbjct 3560 ATGCCCTCCTTATCCTGAATCTTGGACTTGACATTGTCGATGGTGTCGGACGATTCGACT 3619
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439
|| | ||||||||| || || ||||
Sbjct 3620 TCGAGGGTGATGGTCTTGCCAGTGA 3644
>seq2177
Length=34801
Score = 143 bits (158), Expect = 5e-29
Identities = 139/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| |||||||| || |||||||| || | || || || | |||||| |||||||| ||
Sbjct 6202 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6143
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|| | || ||||| || |||||||| |||||||| || ||||| | |||||| |||
Sbjct 6142 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 6083
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|||||||| | || || || || | ||||||||| || ||||| ||||||||||||||
Sbjct 6082 ATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 6024
>seq3539
Length=3624
Score = 95.1 bits (104), Expect = 2e-14
Identities = 158/226 (70%), Gaps = 2/226 (1%)
Strand=Plus/Minus
Query 225772 GTCAATGTCGTGGTCCACGTACACCGTCCGGAGCT-GAGAAGCATCGGGGAAGCCCTCCA 225830
||||| |||||| || ||||| || ||| || || | || | |||||| ||||| |
Sbjct 1915 GTCAAGGTCGTGCTCGACGTAGACGGTCTTGACCTCGCTCTGCTT-GGGGAAACCCTCAA 1857
Query 225831 GCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGA 225890
||| | || || ||||| | ||||| ||||||| | |||||||| |||| |
Sbjct 1856 CCTGCTCGTTGTTGATGGCACGCATGAGGGTGGTCTTGCCGGAACCGTTGGGGCCGAGCA 1797
Query 225891 GGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCAC 225950
| ||||| | | || ||||| | | ||| | || ||| || ||||||||| |||
Sbjct 1796 GACCGTAGCGCTGGCCACGCTTCAGGCGAAGGTGGGTCTGGTTGAGCAGGATCTTGGCAC 1737
Query 225951 CATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996
| ||||| | | ||| ||| | ||| |||||||||||||||||
Sbjct 1736 CGTAGGCCAAGTTGAAGGTGCAGTTGCAGAGGTCCTCACCCTCCTC 1691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921556181430560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |