Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3589 122 2e-22 seq2177 100 7e-16 seq1666 93.3 1e-13 >seq3589 Length=6346 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || | || | || || |||||||| || ||||| || Sbjct 3212 CCACCACGGAGACGAAGCACCAAGTGCAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCC 3271 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||| | ||||| || | || || ||||| || ||||| ||||| ||| ||| Sbjct 3272 AACGTTCTGCCGTCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGATCGGGCGGG 3331 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || ||||| |||| || ||||| || || | || ||| || ||| Sbjct 3332 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATCGTGTCTGACGACTCGACT 3391 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || ||||| ||||||| |||||||||||| |||||||| Sbjct 3392 TCAAGCGTAATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3438 Score = 111 bits (122), Expect = 4e-19 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||||||||| | || || | || | ||| || || ||||| || |||||| Sbjct 2981 TGACCACCGCGGAGACGGAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCG 3040 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 || | ||| || || || || | || || || ||||| ||||| ||||| || || Sbjct 3041 GCCAACGTCCGGCCATCCTCAAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTG---GTCC 3097 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || || || || ||||| || || | || ||||| || || | ||| || Sbjct 3098 GGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATCGTATCCGAAGAC 3157 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| |||||||| ||||||| ||||||||||| |||||||| Sbjct 3158 TCCACCTCAAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3210 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || || | || | ||| ||| || || || || |||||||| Sbjct 3440 CCACCGCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGCA 3499 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | ||| || || |||||||||| ||||| || | ||| Sbjct 3500 AGGGTGCGACCGTCCTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGG 3559 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || |||||||| || || | || || || || || | ||| |||||| ||| Sbjct 3560 ATGCCCTCCTTATCCTGAATCTTGGACTTGACATTGTCGATGGTGTCGGACGATTCGACT 3619 Query 288427 TCGAGCGTGATCGTCTTCCCGGT 288449 ||||| ||||| ||||| || || Sbjct 3620 TCGAGGGTGATGGTCTTGCCAGT 3642 Score = 96.9 bits (106), Expect = 8e-15 Identities = 144/203 (71%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| ||||| |||| ||| || || ||||| || ||||||||| Sbjct 3719 CCGCCACGCAGGCGAAGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 3778 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || |||||||| |||||||| || | ||| Sbjct 3779 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTG-TCAGGGGGG 3837 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || ||||| || || | ||| || || || Sbjct 3838 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGACC 3897 Query 288427 TCGAGCGTGATCGTCTTCCCGGT 288449 || || ||||| ||||| || || Sbjct 3898 TCAAGGGTGATGGTCTTGCCAGT 3920 >seq2177 Length=34801 Score = 100 bits (110), Expect = 7e-16 Identities = 132/182 (73%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||||| ||| ||||| ||||| || | || || || ||||||||| Sbjct 6202 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6143 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| || || ||| || || || || |||||||| || | || || || Sbjct 6142 AGGCGCTGCTGG---TCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 6086 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || ||||| ||||| ||||| || ||||| ||||||||| Sbjct 6085 TCGATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACG 6026 Query 288463 AA 288464 || Sbjct 6025 AA 6024 >seq1666 Length=59928 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 269117 AAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGA 269176 |||||||| | ||||||| |||| | || || |||| ||||| || | |||||| Sbjct 55410 AAGAGTTCCTGACTGACGCTCTCCCCGTTGCTCTGCTCGGCATGAACGCTGGCCTCATGT 55351 Query 269177 ATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGT 269236 || || || || || || ||||| || | | ||| || || | |||| | Sbjct 55350 GCCAGTACATTGAGTTTGTTGCTGACCGCCTGCTGGTGGCGCTTGGCAACAAGAAGCACT 55291 Query 269237 ACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACT 269296 |||| || | || ||||||| ||| ||||| ||||||||| | || ||||| |||| Sbjct 55290 ACAACTCTACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAACGGCAAGACCAACT 55231 Query 269297 TCTTCGAAAAGCGTGTCAGCGACTATCAA 269325 ||||||| ||||| || | ||||||||| Sbjct 55230 TCTTCGAGAAGCGCGTTGGTGACTATCAA 55202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179567522877144