Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq3589 109 6e-19
seq2177 89.7 6e-13
>seq3589
Length=6346
Score = 109 bits (120), Expect = 6e-19
Identities = 166/231 (72%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 41980 GACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAG 42039
|||| || | | ||| | |||||| |||| ||| |||||| || || ||||| || |
Sbjct 2982 GACCACCGCGGAGACGGAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 3041
Query 42040 CCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTG 42099
||| ||||| | || || |||||||| || ||||| || || ||||||||||| | |
Sbjct 3042 CCAACGTCCGGCCATCCTCAAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGGG 3101
Query 42100 GCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTC 42157
| | || |||||||||| ||| | || | |||| ||| | | | ||| || || ||
Sbjct 3102 GAATGCCCTCCTTGTCC-TGAATCTTGGACTTGA-CGTTGTCGATCGTATCCGAAGACTC 3159
Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| || | ||| || || ||||| || | ||||| || ||||| |||||
Sbjct 3160 CACCTCAAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3210
Score = 89.7 bits (98), Expect = 6e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | |||||| || | ||| ||||| ||||| ||||| || || || || || |
Sbjct 3451 ACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGACC 3510
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| || || ||||| || ||||| || | ||||||||||| | || | || ||||||
Sbjct 3511 GTCCTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTT 3570
Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171
||| ||| | || | |||| | | | |||||| |||||| || |||| ||||
Sbjct 3571 ATCC-TGAATCTTGGACTTGACATTGTCGATGGTGTCGGACGATTCGACTTCGAGGGTGA 3629
Query 42172 TGGTTTTGCCCGT 42184
|||| ||||| ||
Sbjct 3630 TGGTCTTGCCAGT 3642
>seq2177
Length=34801
Score = 89.7 bits (98), Expect = 6e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
|||| || || ||||| || | || || || |||| || |||||||| || ||||| |
Sbjct 6204 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 6145
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138
| || ||||||||||| | || | || |||||||||| ||| || |||| |
Sbjct 6144 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 6085
Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198
| | ||||| || || || |||| |||||||| |||||||| || ||||| || |
Sbjct 6084 CGATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGA 6025
Query 42199 AG 42200
||
Sbjct 6024 AG 6023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543173770160320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |